PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g020720.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 29075.9 Da    PI: 9.966
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g020720.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.74.8e-312574150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+
  Sopen02g020720.2 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYA 74
                      79***********************************************8 PP
2K-box105.75.8e-35921903100
             K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaL 94 
                       +s++ s++ea+a+++qqe++kL+++i nL +++R+++Ge L  ++lkeL++Leq++ek+++kiRskKnell+++ie++qk+ e +l+++n++L
  Sopen02g020720.2  92 SSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKRqEVDLHNNNQYL 184
                       3445559************************************************************************983569******** PP

             K-box  95 rkklee 100
                       r+k++e
  Sopen02g020720.2 185 RAKIAE 190
                       ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.4451777IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-401776IPR002100Transcription factor, MADS-box
CDDcd002655.61E-451894No hitNo description
SuperFamilySSF554556.28E-331890IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-331939IPR002100Transcription factor, MADS-box
PfamPF003191.4E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-335475IPR002100Transcription factor, MADS-box
PfamPF014863.5E-25101188IPR002487Transcription factor, K-box
PROSITE profilePS5129714.522103194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LVVFSNRGRL YEYANNSVKA TIERYKKACS DSSNTGSVSE ANAQYYQQEA SKLRAQIGNL  120
MNQNRNMMGE ALAGMKLKEL KNLEQRIEKG ISKIRSKKNE LLFAEIEYMQ KRQEVDLHNN  180
NQYLRAKIAE TERAQHQHQH QQMNLMPGSS SSYHELVPPP QQFDSRNYLQ VNGLQTNNHY  240
PRQDQPPIQL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q6e-201785169Myocyte-specific enhancer factor 2B
1tqe_R6e-201785169Myocyte-specific enhancer factor 2B
1tqe_S6e-201785169Myocyte-specific enhancer factor 2B
5f28_A8e-201785169MEF2C
5f28_B8e-201785169MEF2C
5f28_C8e-201785169MEF2C
5f28_D8e-201785169MEF2C
6byy_A8e-201785169MEF2 CHIMERA
6byy_B8e-201785169MEF2 CHIMERA
6byy_C8e-201785169MEF2 CHIMERA
6byy_D8e-201785169MEF2 CHIMERA
6c9l_A6e-201785169Myocyte-specific enhancer factor 2B
6c9l_B6e-201785169Myocyte-specific enhancer factor 2B
6c9l_C6e-201785169Myocyte-specific enhancer factor 2B
6c9l_D6e-201785169Myocyte-specific enhancer factor 2B
6c9l_E6e-201785169Myocyte-specific enhancer factor 2B
6c9l_F6e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankTOMTAG1A0.0L26295.1 Lycopersicon esculentum TAG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064366.10.0floral homeotic protein AGAMOUS isoform X1
RefseqXP_027770165.10.0floral homeotic protein AGAMOUS isoform X2
SwissprotQ401680.0AG_SOLLC; Floral homeotic protein AGAMOUS
TrEMBLA0A0V0HS601e-173A0A0V0HS60_SOLCH; Putative floral homeotic protein AGAMOUS-like
STRINGSolyc02g071730.2.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-120MIKC_MADS family protein
Publications ? help Back to Top
  1. Pan IL,McQuinn R,Giovannoni JJ,Irish VF
    Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development.
    J. Exp. Bot., 2010. 61(6): p. 1795-806
    [PMID:20335407]
  2. Gimenez E, et al.
    TOMATO AGAMOUS1 and ARLEQUIN/TOMATO AGAMOUS-LIKE1 MADS-box genes have redundant and divergent functions required for tomato reproductive development.
    Plant Mol. Biol., 2016. 91(4-5): p. 513-31
    [PMID:27125648]