PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g021850.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 239aa    MW: 26647.6 Da    PI: 9.0907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g021850.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-135399354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      ++h+e+ErrRR+riN  +++Lr l+P++      K++Ka+ L ++v+ +k+L
  Sopen02g021850.1 53 KSHSEAERRRRQRINAHLSTLRNLVPSS-----DKMDKAALLAEVVRQVKQL 99
                      58*************************8.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4475099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-105399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.26E-1153101No hitNo description
SuperFamilySSF474592.75E-1353105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1354105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1156105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.4E-4137181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MNCRNLGEFC ENEAKGVVQS LVLDSEKGEL VKASGRVEKR IGKSEGKTIA ALKSHSEAER  60
RRRQRINAHL STLRNLVPSS DKMDKAALLA EVVRQVKQLK ETATHVSERF FIPLDSDEIK  120
VELIAENAID GTCLYRASVC CEYRTHLLSD LKQTINSLHV NLVKSEISTL GSRVKNVFLF  180
TNLIHGGGCA TIQAREIFLA SVRQAFSSVL DKVSAFPEYS AYPNKRQRVS CFDSSTLLF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065344.11e-175transcription factor bHLH30-like
TrEMBLA0A3Q7FPX71e-167A0A3Q7FPX7_SOLLC; Uncharacterized protein
STRINGSolyc02g076920.2.11e-168(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-35bHLH family protein