PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g022490.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 179aa    MW: 20804.3 Da    PI: 7.9297
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g022490.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.3e-191669356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++ +++++ql+ Le  F +n +++ +++ +LA++lgL+ rqV +W+qN+Ra++k
  Sopen02g022490.1 16 HKKRLNQDQLRLLEISFSSNYKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWK 69
                      67789************************************************9 PP
2HD-ZIP_I/II108.16.5e-3516107293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       +k+rl+++q++lLE sF+++ kL+++rK++la+eLgl prqva+W+qn+RAR+k++ lE+dy++L++++d+  e+ne+L+ eve+Lr+el++
  Sopen02g022490.1  16 HKKRLNQDQLRLLEISFSSNYKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKTLQQRLDNALEDNEKLKLEVERLRKELNK 107
                       69***************9999*******************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-171172IPR009057Homeodomain-like
SMARTSM003892.7E-161475IPR001356Homeobox domain
PfamPF000465.8E-161669IPR001356Homeobox domain
CDDcd000861.15E-141672No hitNo description
PROSITE profilePS5007115.3371771IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-181878IPR009057Homeodomain-like
PRINTSPR000315.9E-64251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000315.9E-65167IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDFLSCQTRK IHLKCHKKRL NQDQLRLLEI SFSSNYKLDS DRKSQLAQEL GLPPRQVAIW  60
YQNKRARWKS QSLEVDYKTL QQRLDNALED NEKLKLEVER LRKELNKNQE VLLGFNTTTT  120
NNYSSISSSC DEVGSTSCLQ LHDQSKHNHL DKEFYACLIG DEGHFGTHDG HNFFASSLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818RKIHLKCHKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065114.11e-130homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A3Q7F4431e-125A0A3Q7F443_SOLLC; Uncharacterized protein
STRINGSolyc02g077590.1.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.16e-24homeobox protein 52