PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g022560.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 1659aa MW: 185907 Da PI: 4.8427

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g022560.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps++ r+eL++klgLt+rq ++WF+ rR k+k+ Sopen02g022560.1 24 PKRQMKTPFQLETLERVYAMETYPSEAIRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-17	12	79	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.22E-16	12	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	20	80	IPR001356	Homeobox domain
SMART	SM00389	7.7E-18	22	84	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	24	78	IPR001356	Homeobox domain
CDD	cd00086	2.82E-14	25	81	No hit	No description
SMART	SM00571	3.7E-18	508	567	IPR018501	DDT domain
PROSITE profile	PS50827	15.222	508	567	IPR018501	DDT domain
Pfam	PF02791	3.0E-14	510	564	IPR018501	DDT domain
Pfam	PF05066	1.2E-12	689	756	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.5E-6	873	916	IPR028942	WHIM1 domain
Pfam	PF15613	3.6E-14	1044	1116	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1659 aa Download sequence Send to blast
MDGGSDGEGN RNLIQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA IRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GGTGGKRNLP ESPREDLVVA EAASDRGSGS 120 VSRSGSGSGS SRFDNGDDMP APSIRSYESP RRAMERRVIA CIEAQLGEPL RDDGPIIGVE 180 FDELPPGAFG IPIDLEERTD HYRQSFDSKL YGPYDAKVNV GSALSLSPVL TNGHREPAEP 240 KIVSDKYGQI AAPYPYESSV DCPSKNMATM QRNGHFVRES GVEGQSIGMM SQQSRQRRFL 300 SPLRDNEFVP GNEDILQLDR KRKSEEFGMG REVQVNEKRM RKELEKQDLL RRKMEEQMKK 360 DMEKQDRERK KEEQRLMREQ QRKEERFQRE EKREMERREK FLQRELVRVE RKKQKDELRK 420 EKEAAKQKAA MEKAMARRIA KESMELIEDE RLELMDLAAS SKGLPSIASL NYDTLQNLES 480 FRESLCEFPP KSVQLKKPFS IEPWIASDDN VGNLLMAWRF CLNFADVLGL WPFTLDEFLQ 540 AFHDYDSILL AEIQIALLKL IIKDIEDVAR TPSGGPGTNQ YSAVNPEGGH PQIVEGAYLW 600 GFDIRNWQRL LNPLTWSEVL RQFALSAGFG PPLKKKRERT CLNDSDETKG CEDIVSNLRS 660 GSAALNAVAI MQEKGFMSQR KSRHRLTPGT VKFAAYHVLA LEGDKGLNVL DIAERIQKSG 720 LRDLSTSKTP EASISVALSR DPILFERIAP STYNVRLAFR KDPADADAII SAAKEKIQRY 780 ANGFLSGQNA EDEERDDDSE GEGDVAEGPE VDDLGTSYGP NKNNEQSSLL DTCLVNGKSK 840 LSDEIGQQIG VDVVGVAGSN PSQGCSEIDE TKAGEPWVQG LAEGEYSDLC VEERLSALIA 900 LIGIANEGNS IRAILEDRLD AANALKKQMW AESQLDKRRL KEETINKFND SSFNVVVEGS 960 QSPLGYPNNK NHGTSPTTLV KDDSAGIVDN LQNHFESIPA EKNSAAQETF VGQFAVPSGN 1020 TAERSRMQLK SFIGHKAEEM YVYRSLPLGQ DRRRNRYWLF VASGSSEDPG SGRIFVESPH 1080 GCWKLIDTEE AFDCLLASLD TRGVRESHLH IMLQKIEGPF KGRARQNMSC GASSNPTSGA 1140 SADSPGSAIY GVSSDSWETS SSFKIELGRT EEEKKNALQR YQVFQIWMWK ECLSSSILCA 1200 MQYGKKRCLP LLGICGHCLD SYLSEEGICP SCNKMNCEVD MNGKFIEQAM DSMDNLKIDY 1260 DNLVVSNACP VRVRLMKAVL SFTEVCVPYE ALQSSWTEDC RKTWGLKLQN SSSPEDLLQI 1320 LTQLEGVINR DYLSADYETA QELMGLCALS RKAALESTYP EPVPQLPWIP QTTSAVALRL 1380 LELDSSISYD PQQKTEAELK NKVDCLPKPS LGYASLKDPQ KIEPTVIDHG LMREENWDYL 1440 SNMPSSSRSR QVVRGRGGSR PRGKLQKGTT SKQPESDRTV VRPSETLTQV LIKQGETHGQ 1500 RHVRGRRTVR KRRIEQKIVE EAQPDYLGDR SSRLSLVVSP RKHVTEEFDM NMEGIEATND 1560 NSISMEAAES DDSAPENTYD FNRSDLMDMS DEDQVVSAGD GIEDDNDDED DDDDNADRYR 1620 SHGQNLGRYV NMDDDDSDRD GDANEDQESG SSESEDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1659 aa Download sequence Send to blast

MDGGSDGEGN RNLIQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA IRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GGTGGKRNLP ESPREDLVVA EAASDRGSGS  120
VSRSGSGSGS SRFDNGDDMP APSIRSYESP RRAMERRVIA CIEAQLGEPL RDDGPIIGVE  180
FDELPPGAFG IPIDLEERTD HYRQSFDSKL YGPYDAKVNV GSALSLSPVL TNGHREPAEP  240
KIVSDKYGQI AAPYPYESSV DCPSKNMATM QRNGHFVRES GVEGQSIGMM SQQSRQRRFL  300
SPLRDNEFVP GNEDILQLDR KRKSEEFGMG REVQVNEKRM RKELEKQDLL RRKMEEQMKK  360
DMEKQDRERK KEEQRLMREQ QRKEERFQRE EKREMERREK FLQRELVRVE RKKQKDELRK  420
EKEAAKQKAA MEKAMARRIA KESMELIEDE RLELMDLAAS SKGLPSIASL NYDTLQNLES  480
FRESLCEFPP KSVQLKKPFS IEPWIASDDN VGNLLMAWRF CLNFADVLGL WPFTLDEFLQ  540
AFHDYDSILL AEIQIALLKL IIKDIEDVAR TPSGGPGTNQ YSAVNPEGGH PQIVEGAYLW  600
GFDIRNWQRL LNPLTWSEVL RQFALSAGFG PPLKKKRERT CLNDSDETKG CEDIVSNLRS  660
GSAALNAVAI MQEKGFMSQR KSRHRLTPGT VKFAAYHVLA LEGDKGLNVL DIAERIQKSG  720
LRDLSTSKTP EASISVALSR DPILFERIAP STYNVRLAFR KDPADADAII SAAKEKIQRY  780
ANGFLSGQNA EDEERDDDSE GEGDVAEGPE VDDLGTSYGP NKNNEQSSLL DTCLVNGKSK  840
LSDEIGQQIG VDVVGVAGSN PSQGCSEIDE TKAGEPWVQG LAEGEYSDLC VEERLSALIA  900
LIGIANEGNS IRAILEDRLD AANALKKQMW AESQLDKRRL KEETINKFND SSFNVVVEGS  960
QSPLGYPNNK NHGTSPTTLV KDDSAGIVDN LQNHFESIPA EKNSAAQETF VGQFAVPSGN  1020
TAERSRMQLK SFIGHKAEEM YVYRSLPLGQ DRRRNRYWLF VASGSSEDPG SGRIFVESPH  1080
GCWKLIDTEE AFDCLLASLD TRGVRESHLH IMLQKIEGPF KGRARQNMSC GASSNPTSGA  1140
SADSPGSAIY GVSSDSWETS SSFKIELGRT EEEKKNALQR YQVFQIWMWK ECLSSSILCA  1200
MQYGKKRCLP LLGICGHCLD SYLSEEGICP SCNKMNCEVD MNGKFIEQAM DSMDNLKIDY  1260
DNLVVSNACP VRVRLMKAVL SFTEVCVPYE ALQSSWTEDC RKTWGLKLQN SSSPEDLLQI  1320
LTQLEGVINR DYLSADYETA QELMGLCALS RKAALESTYP EPVPQLPWIP QTTSAVALRL  1380
LELDSSISYD PQQKTEAELK NKVDCLPKPS LGYASLKDPQ KIEPTVIDHG LMREENWDYL  1440
SNMPSSSRSR QVVRGRGGSR PRGKLQKGTT SKQPESDRTV VRPSETLTQV LIKQGETHGQ  1500
RHVRGRRTVR KRRIEQKIVE EAQPDYLGDR SSRLSLVVSP RKHVTEEFDM NMEGIEATND  1560
NSISMEAAES DDSAPENTYD FNRSDLMDMS DEDQVVSAGD GIEDDNDDED DDDDNADRYR  1620
SHGQNLGRYV NMDDDDSDRD GDANEDQESG SSESEDYSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015065715.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
TrEMBL	A0A3Q7F5I7	0.0	A0A3Q7F5I7_SOLLC; Uncharacterized protein
STRING	Solyc02g077660.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1