PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g022680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 178aa    MW: 19970.8 Da    PI: 9.8987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g022680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-161766255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGVr  + +g + AeI++ s   +r+ ++lg+f+taeeAa+a++aa++++ g
  Sopen02g022680.1 17 RYKGVRKLS-TGNYIAEIKVTS---QRRFVWLGTFDTAEEAARAYDAAAREYLG 66
                      59****887.9*********43...35************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-171775IPR016177DNA-binding domain
PfamPF008476.7E-101766IPR001471AP2/ERF domain
PROSITE profilePS5103218.3211774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-221774IPR001471AP2/ERF domain
SMARTSM003802.5E-251780IPR001471AP2/ERF domain
PRINTSPR003673.8E-61829IPR001471AP2/ERF domain
PRINTSPR003673.8E-64056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAQKSNINVR VGSSEMRYKG VRKLSTGNYI AEIKVTSQRR FVWLGTFDTA EEAARAYDAA  60
AREYLGPRTV INFPPLTNQK DVKRSRNYLQ KLNRKDVMIN TCASSSGSGE TLKSSDQEEF  120
RRFTTVTGVS VMMSMVRDRS LIDALMREGL ILPDPEIIDT EPLNLELTLA PPGTMSNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-141178876Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064827.11e-130ethylene-responsive transcription factor 4-like
TrEMBLA0A3Q7FQJ11e-109A0A3Q7FQJ1_SOLLC; Uncharacterized protein
STRINGSolyc02g077810.1.11e-110(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1848844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.18e-09ethylene responsive element binding factor 4