PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g022770.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SBP

Protein Properties

Length: 98aa MW: 11171.6 Da PI: 8.2317

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g022770.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	76.7	3.8e-24	52	98	2	48
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 Cqv++C+ad+++ak yhrrhkvCe+hsk+p vl+sgl++rfCqqCsr Sopen02g022770.1 52 CQVDQCTADMADAKPYHRRHKVCEFHSKSPIVLISGLQKRFCQQCSR 98 **********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.0E-24	45	98	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	20.102	49	98	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-22	50	98	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-18	52	98	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
METNKWEGKR SITEAEKEED EHGSVEEDSK RKRVLTLSGR KLVGEGSAHP SCQVDQCTAD 60 MADAKPYHRR HKVCEFHSKS PIVLISGLQK RFCQQCSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-20	52	98	11	57	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM155895	1e-165	HM155895.1 Solanum lycopersicum isolate 71_P3CNRDseq genomic sequence.
GenBank	HM155896	1e-165	HM155896.1 Solanum lycopersicum isolate 72_P3CNRDseq genomic sequence.
GenBank	HM155897	1e-165	HM155897.1 Solanum lycopersicum isolate 74_P3CNRDseq genomic sequence.
GenBank	HM155898	1e-165	HM155898.1 Solanum lycopersicum isolate 75_P3CNRDseq genomic sequence.
GenBank	HM155899	1e-165	HM155899.1 Solanum lycopersicum isolate 76_P3CNRDseq genomic sequence.
GenBank	HM155900	1e-165	HM155900.1 Solanum lycopersicum isolate 79_P3CNRDseq genomic sequence.
GenBank	HM155901	1e-165	HM155901.1 Solanum lycopersicum isolate 81_P3CNRDseq genomic sequence.
GenBank	HM155902	1e-165	HM155902.1 Solanum lycopersicum isolate 83_P3CNRDseq genomic sequence.
GenBank	HM155903	1e-165	HM155903.1 Solanum lycopersicum isolate 82_P3CNRDseq genomic sequence.
GenBank	HM155904	1e-165	HM155904.1 Solanum lycopersicum isolate 84_P3CNRDseq genomic sequence.
GenBank	HM155905	1e-165	HM155905.1 Solanum lycopersicum isolate 85_P3CNRDseq genomic sequence.
GenBank	HM155906	1e-165	HM155906.1 Solanum lycopersicum isolate 87_P3CNRDseq genomic sequence.
GenBank	HM155907	1e-165	HM155907.1 Solanum lycopersicum isolate 88_P3CNRDseq genomic sequence.
GenBank	HM155908	1e-165	HM155908.1 Solanum lycopersicum isolate 89_P3CNRDseq genomic sequence.
GenBank	HM155909	1e-165	HM155909.1 Solanum lycopersicum isolate 90_P3CNRDseq genomic sequence.
GenBank	HM155910	1e-165	HM155910.1 Solanum lycopersicum isolate 91_P3CNRDseq genomic sequence.
GenBank	HM155911	1e-165	HM155911.1 Solanum lycopersicum isolate 92_P3CNRDseq genomic sequence.
GenBank	HM155912	1e-165	HM155912.1 Solanum lycopersicum isolate 93_P3CNRDseq genomic sequence.
GenBank	HM155913	1e-165	HM155913.1 Solanum lycopersicum isolate 94_P3CNRDseq genomic sequence.
GenBank	HM155914	1e-165	HM155914.1 Solanum lycopersicum isolate 95_P3CNRDseq genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232901.1	5e-68	SQUAMOSA promoter binding protein-like isoform X4
Swissprot	Q38741	4e-33	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A3Q7F4A8	1e-66	A0A3Q7F4A8_SOLLC; Uncharacterized protein
STRING	Solyc02g077920.2.1	6e-67	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	3e-24	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]