PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g023190.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 205aa    MW: 24246.7 Da    PI: 9.4879
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g023190.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.22.6e-33261232102
                       HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
      HSF_DNA-bind   2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                       Fl+k+y++le      ++++ +++sw+ +gn fvv+ ++ef++ +LpkyFkh+nf+SF+RQLn+YgFkkv +++         weF+h++F+k
  Sopen02g023190.1  26 FLSKTYDLLEeqeeenSNSNIKVVSWNGEGNGFVVWCPDEFSEVMLPKYFKHNNFSSFIRQLNTYGFKKVASKR---------WEFHHEKFQK 109
                       9*********5555444477889************************************************999.........********** PP

                       XXXXXXXXXXXXXX CS
      HSF_DNA-bind  89 gkkellekikrkks 102
                       g ++ll +i rkk 
  Sopen02g023190.1 110 GCRHLLAEITRKKC 123
                       ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-3518115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-4022121IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-2723121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2926121IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MATDDNRNIH RKIGRSTTRT KCPAPFLSKT YDLLEEQEEE NSNSNIKVVS WNGEGNGFVV  60
WCPDEFSEVM LPKYFKHNNF SSFIRQLNTY GFKKVASKRW EFHHEKFQKG CRHLLAEITR  120
KKCEPSVFPT YLNPSKRSTL LLATNNNDQE NTITRQLLME ENQNLKKERM ELQMQIAHFK  180
TLEMKLLQCL SQCVENPHNK TRRLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A3e-16221217110Heat shock factor protein 2
5hdk_B3e-16221217110Heat shock factor protein 2
5hdk_C3e-16221217110Heat shock factor protein 2
5hdk_D3e-16221217110Heat shock factor protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064197.11e-153heat stress transcription factor B-2a-like
TrEMBLM1CWQ41e-130M1CWQ4_SOLTU; Uncharacterized protein
STRINGSolyc02g078340.2.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107071823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-37heat shock transcription factor B2A