PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g023980.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HSF

Protein Properties

Length: 409aa MW: 46564 Da PI: 4.6091

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g023980.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	98	9e-31	88	180	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 F+ k+ye+l d ++k+lisws+ng+sf+++d+++fa +vLp++F+h+n++SFv QLn YgFkkv+ ++ eF+h+ F++gk + l Sopen02g023980.1 88 FVLKIYEMLADIQFKSLISWSNNGTSFIIHDNHKFAVDVLPRFFRHNNISSFVCQLNSYGFKKVSWDK---------FEFQHDCFQRGKGQWL 171 9***************************************************************99.........67********** PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++ikrk s+ Sopen02g023980.1 172 RNIKRKISK 180 ***9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.0E-38	84	177	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.3E-30	85	177	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.45E-28	86	177	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	4.0E-13	88	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	6.2E-27	88	177	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-13	126	138	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-13	139	151	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
METEGGKGKG KMTEIDDIVE ALGESYEGLE DVHIDISMLE YDDDDDDDNQ CDNRSNEVNH 60 GNAAAATPRE LFSSSSNRRN FQRRASPFVL KIYEMLADIQ FKSLISWSNN GTSFIIHDNH 120 KFAVDVLPRF FRHNNISSFV CQLNSYGFKK VSWDKFEFQH DCFQRGKGQW LRNIKRKISK 180 SQMNEQSTER QAIDETVAFT MEKAIEEIRA EQVTMREEIM MLQRQLDVLE KEMEDINEAG 240 NNMSSKKAKI CMILFNSLFA CTRGLDSTEV AEEQGGEVED GVENSGKGNR GKKRKMQVVE 300 ELEGVNEGRK KGNPGKERKM QVIEELEGDN EGRKKIADAA DFKTGSYLGR MLMDEMNLNN 360 LAQEQPDNFL ESEELAGSST FWTDHVEKMD HKAICGVDPA LSQSQEIPL

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

METEGGKGKG KMTEIDDIVE ALGESYEGLE DVHIDISMLE YDDDDDDDNQ CDNRSNEVNH  60
GNAAAATPRE LFSSSSNRRN FQRRASPFVL KIYEMLADIQ FKSLISWSNN GTSFIIHDNH  120
KFAVDVLPRF FRHNNISSFV CQLNSYGFKK VSWDKFEFQH DCFQRGKGQW LRNIKRKISK  180
SQMNEQSTER QAIDETVAFT MEKAIEEIRA EQVTMREEIM MLQRQLDVLE KEMEDINEAG  240
NNMSSKKAKI CMILFNSLFA CTRGLDSTEV AEEQGGEVED GVENSGKGNR GKKRKMQVVE  300
ELEGVNEGRK KGNPGKERKM QVIEELEGDN EGRKKIADAA DFKTGSYLGR MLMDEMNLNN  360
LAQEQPDNFL ESEELAGSST FWTDHVEKMD HKAICGVDPA LSQSQEIPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-24	88	179	29	131	Heat shock factor protein 1
5d5v_B	4e-24	88	179	29	131	Heat shock factor protein 1
5d5v_D	4e-24	88	179	29	131	Heat shock factor protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015065476.1	0.0	heat stress transcription factor B-3-like
TrEMBL	K4B9E2	0.0	K4B9E2_SOLLC; Uncharacterized protein
STRING	Solyc02g079180.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14099	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11660.1	2e-29	HSF family protein