PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g025400.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 290aa    MW: 31788.7 Da    PI: 9.9105
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g025400.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.52.6e-124066228
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAt 28
                      prlrWt++LH+rFv ave+LGG ++A 
  Sopen02g025400.1 40 PRLRWTHDLHRRFVYAVERLGGVDQAA 66
                      8***********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-103692IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMKGLKFSEN SPSLSMKLVY SSNDKSSEFA VRAYVKSTMP RLRWTHDLHR RFVYAVERLG  60
GVDQAANGRK RNRIDGSDST NISQRNLVHR YNHIKGKAAM FDGSDQMNFP QGNLVHCYNQ  120
NNGKTPIFNG SDQMNFPQGN LVHRCNHNNG KSVFDGHLNP TVTTNYLEKI ASSSTAFPPP  180
WKPMPEKKMG LEGQYYMFRD FFDGTITIRD GDDDNKIVRA FGISNLPNKS ATSMIEEEDS  240
HSTMSLKLSL SAITPPFGLG AGVGGFGGSI RGAFGSGFGP LAGNGGTSSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064850.10.0uncharacterized protein LOC107010103
TrEMBLK4B9U31e-148K4B9U3_SOLLC; Uncharacterized protein
STRINGSolyc02g080720.1.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13843412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.17e-11G2-like family protein