PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g025410.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 466aa    MW: 51168.7 Da    PI: 8.7983
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g025410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33e-322578255
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      prlrWt +LH+rFv+av++LGG ++AtPk +l++m+vkgLt++h+kSHLQ+YR+
  Sopen02g025410.1 25 PRLRWTDDLHRRFVHAVDHLGGVDRATPKMVLQIMDVKGLTISHIKSHLQMYRS 78
                      8****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1142181IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-302480IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-242578IPR006447Myb domain, plants
SuperFamilySSF466892.15E-152581IPR009057Homeodomain-like
SuperFamilySSF495036.16E-8413466IPR008972Cupredoxin
PfamPF077311.6E-8413466IPR011706Multicopper oxidase, type 2
Gene3DG3DSA:2.60.40.4201.3E-6414466IPR008972Cupredoxin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0005507Molecular Functioncopper ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MELGNSNSDK SSEFAIRAFV KPIMPRLRWT DDLHRRFVHA VDHLGGVDRA TPKMVLQIMD  60
VKGLTISHIK SHLQMYRSLK RQEMQEAANG RKRNRIDGSD SMNIAQGNLV HRYNHINGKA  120
AVIDGSDQMN FPQGNLVNGY NHIKGKAAMF DGSDQINFPR GNLVHCYNHN NGKAPIFNGS  180
DQMNFPQGNL VHRYNHNNGK SVFDGHLNPT VTTNYLDKIA SSSTVFPPPW KPMPEKKMGL  240
EGRCYMFRDF FDGTITIRDG DDDNKILRAY GISNLPNKSA TSMIEEEDSH STMSLELSLK  300
SFIAFFGSFG GVRGAIRPPF GLGAGFGGFG GSIGGAFGSG FGPFTGNGGT SSARSGSVSG  360
FGSDINEGFG DNGGNNPNDK IEGELDAGDL ARNLLSKILL IVQLMKLCVQ SWIDGYFLFV  420
VGMDGGQWTP ANRAHYNLRD TIARCTVQVY PKLWTAIYMA FDNVGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-182680458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-182680458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-182680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-182680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-182680357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-182680357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-182680458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-182680458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-182680458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-182680458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-182680458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-182680458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770015.10.0two-component response regulator ORR24-like
TrEMBLK4B9U30.0K4B9U3_SOLLC; Uncharacterized protein
STRINGSolyc02g080720.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13843412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.13e-26G2-like family protein