PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g025420.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 355aa    MW: 39460.4 Da    PI: 9.8415
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g025420.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.21e-294092254
           G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                      prlrWt++LH++Fv ave+LGG ++AtPk +l++m+vkgL+++h+kSHLQ+Y+
  Sopen02g025420.1 40 PRLRWTHDLHRHFVYAVERLGGVDRATPKMVLQIMDVKGLAISHIKSHLQMYK 92
                      8***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-273695IPR009057Homeodomain-like
SuperFamilySSF466892.15E-123993IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-214093IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMKGLEFSEN SPSLSMELGY SSNDKSSEFA IRAYVKSTMP RLRWTHDLHR HFVYAVERLG  60
GVDRATPKMV LQIMDVKGLA ISHIKSHLQM YKNMKHQEMQ GEAANGRKRN RIDGSDSTNI  120
PQRNLVHRYS HIKGKAAMFD GSDSINFPQR NLVHRYNHIK GKAAMFDGSD QMNFPQGNLV  180
HCYNYNNGKA PIFNGSDQMN FSQRNLVHRY NYNNGKSVFD AHLNPTVTTN YLDKIASSST  240
AFPPPWKSMP EKKMGLERRY YLFRDFFDGT ITIRDGDNDD KIVRAYGISN LPNKSATSMV  300
EEEDSHSTIS LDLSLSAITP PFGLGAGVGG FGASIRGALG SGFGPLAGNG GTSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-164196358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-164196358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-164196358Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-164196358Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770015.10.0two-component response regulator ORR24-like
TrEMBLK4B9U30.0K4B9U3_SOLLC; Uncharacterized protein
STRINGSolyc02g080720.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13843412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42660.14e-29G2-like family protein