PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g025550.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 211aa MW: 23599.5 Da PI: 6.644

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g025550.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	2	55	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH++Fv+ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ Sopen02g025550.2 2 PRLRWTHDLHRCFVHAVERLGGEDRATPKMVLQLMDVKGLTISHVKSHLQMYRS 55 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-31	1	57	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.669	1	58	IPR017930	Myb domain
TIGRFAMs	TIGR01557	7.2E-25	2	56	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.7E-15	2	56	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-7	3	54	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MPRLRWTHDL HRCFVHAVER LGGEDRATPK MVLQLMDVKG LTISHVKSHL QMYRSMKHEQ 60 LMQVAEAANG SKSNKMDGPD QVHYPHGNFL HHYYNGHPNS TITSTYSYEI ASKPAFIPPA 120 PWKPMPKKMM GLEGRSDPAC NMFRDFFNGC TTVQDGSECD QYGSSLSNKH FSIIDTEEEA 180 QDSGSITMSA QPSAGLDDVN NNNISLDLTL G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-19	3	58	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-19	3	58	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-19	3	58	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-19	3	58	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-19	3	58	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	4e-94	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015065526.1	1e-159	myb family transcription factor EFM-like
TrEMBL	A0A2G2VBP5	3e-98	A0A2G2VBP5_CAPBA; Putative transcription factor RL9
STRING	Solyc02g080860.1.1	1e-149	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7450	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	1e-29	G2-like family protein