PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g026250.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 723aa    MW: 80305 Da    PI: 4.4351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g026250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.5e-12572613346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rW++++ el+++av+q+G++  ++I + ++ gRt+ q+k+++ k
  Sopen02g026250.1 572 RWSKQDTELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 613
                       9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.8E-28563647No hitNo description
PROSITE profilePS5129310.79568619IPR017884SANT domain
SMARTSM007171.9E-9569617IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-10571620IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-6572613IPR009057Homeodomain-like
CDDcd001671.27E-7572613No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MDLLDDIFAG GASKTVKAGG KFQPKAKPRP VKKGPAVASS SLTSKPTGDT VATDYSEGFK  60
SAKNSQNCDE QSPVLAEPSL GRPLAAETLV PSVGSSLDAS MVITDNNEDW KSCFEKSEGE  120
NADIYIGLDS FDDLLPHSSG IDPSAAHAAG AEKRQEQLLI PVSSVDDSAH SASNLQSDEV  180
AAGQDPLTFQ ASVLSVSGSC QMEMDTYSSL EADILGVTTI SGQSRRFQPK PKLQVYRERY  240
DTIIPDLDVG ESVSCLPDSQ SVHSEMDFVN SEKEHGLPAA DVLDFSVRGF DNNIITESAH  300
EFPVHEEYVV EASLPDADIP ANHSEATSQM PEESVPQRPK NKKQKFPASE LSAISEENGE  360
SKENGESRSL RSRRKSVNAS RLVDESDEDV IGDGEYVPEH PNDSVTIGND EEFLVENDSQ  420
GKKVQKKSKK TVTKEGKRVR KSKKTAEASD QAANKKPKKF SHSTRQKRRT VDKALLEAPM  480
DEIDYSKVPI KDLILLAEHR ERLAKKDAAV SQIPPPTTDQ SAGASVSNYD EDETYASDED  540
GEADDHNKST MGEDTSSYFN YQTYMDKTPS TRWSKQDTEL FYEAVQQFGT DLSLIQQLFP  600
GRTRRQLKLK YKKEERQNPF RLHDVLTNRS KDHSHFERVI EHLKQIEAEE LQYADKDESI  660
DLTGEEEMEG NQEICQEEAK SEHVEEKEVE TVEQDVPGME NPVKEYDDDE DDFMKWSQYT  720
SEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424443QKKSKKTVTKEGKRVRKSKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067052.10.0transcription factor TFIIIB component B'' isoform X1
RefseqXP_027770631.10.0transcription factor TFIIIB component B'' isoform X1
TrEMBLM1BI380.0M1BI38_SOLTU; Uncharacterized protein
STRINGSolyc02g081640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59022326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-49MYB_related family protein