PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g026250.3
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 713aa    MW: 79196.8 Da    PI: 4.4048
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g026250.3genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.4e-12562603346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rW++++ el+++av+q+G++  ++I + ++ gRt+ q+k+++ k
  Sopen02g026250.3 562 RWSKQDTELFYEAVQQFGTD-LSLIQQLFP-GRTRRQLKLKYKK 603
                       9*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.8E-28553637No hitNo description
PROSITE profilePS5129310.79558609IPR017884SANT domain
SMARTSM007171.9E-9559607IPR001005SANT/Myb domain
SuperFamilySSF466892.92E-10561610IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-6562603IPR009057Homeodomain-like
CDDcd001671.24E-7562603No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MDLLDDIFAG GASKTVKAGG KFQPKAKPRP VKKGPAVASS SLTSKPTGDT VATDYSEGDE  60
QSPVLAEPSL GRPLAAETLV PSVGSSLDAS MVITDNNEDW KSCFEKSEGE NADIYIGLDS  120
FDDLLPHSSG IDPSAAHAAG AEKRQEQLLI PVSSVDDSAH SASNLQSDEV AAGQDPLTFQ  180
ASVLSVSGSC QMEMDTYSSL EADILGVTTI SGQSRRFQPK PKLQVYRERY DTIIPDLDVG  240
ESVSCLPDSQ SVHSEMDFVN SEKEHGLPAA DVLDFSVRGF DNNIITESAH EFPVHEEYVV  300
EASLPDADIP ANHSEATSQM PEESVPQRPK NKKQKFPASE LSAISEENGE SKENGESRSL  360
RSRRKSVNAS RLVDESDEDV IGDGEYVPEH PNDSVTIGND EEFLVENDSQ GKKVQKKSKK  420
TVTKEGKRVR KSKKTAEASD QAANKKPKKF SHSTRQKRRT VDKALLEAPM DEIDYSKVPI  480
KDLILLAEHR ERLAKKDAAV SQIPPPTTDQ SAGASVSNYD EDETYASDED GEADDHNKST  540
MGEDTSSYFN YQTYMDKTPS TRWSKQDTEL FYEAVQQFGT DLSLIQQLFP GRTRRQLKLK  600
YKKEERQNPF RLHDVLTNRS KDHSHFERVI EHLKQIEAEE LQYADKDESI DLTGEEEMEG  660
NQEICQEEAK SEHVEEKEVE TVEQDVPGME NPVKEYDDDE DDFMKWSQYT SEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414433QKKSKKTVTKEGKRVRKSKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067052.10.0transcription factor TFIIIB component B'' isoform X1
RefseqXP_027770631.10.0transcription factor TFIIIB component B'' isoform X1
TrEMBLM1BI380.0M1BI38_SOLTU; Uncharacterized protein
STRINGSolyc02g081640.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-49MYB_related family protein