PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g026380.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 270aa    MW: 31213.9 Da    PI: 9.7578
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g026380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.3e-111812511386
                       TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       +  +++pk+fa++ g+ + +  ++++ + e+   W+v++     sg++ +tkGW  F   n++  gD++ Fkl++
  Sopen02g026380.1 181 KTFMTIPKRFAKRTGIFSMK--KMKVVNeEEKGYWRVEI--VDMSGTIRITKGWAAFRTYNKIVCGDSCRFKLIK 251
                       3459*******999776444..566666366789*****..99999**************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.366180IPR003340B3 DNA binding domain
SMARTSM010190.01184IPR003340B3 DNA binding domain
CDDcd100171.18E-8175No hitNo description
SuperFamilySSF1019363.53E-12281IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-7272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-12280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-16164259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-16166260IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.869169263IPR003340B3 DNA binding domain
CDDcd100174.31E-8170253No hitNo description
SMARTSM010197.6E-4172263IPR003340B3 DNA binding domain
PfamPF023622.5E-8180251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MPSCFIKENK KMLTKACLLK TDEAGMLWEA KIVREKSNNY FICKGEWPQF VVHHQLKQGD  60
VLLFFLVEKS VFHVHPYTRK CRRNIRDEKK KLFYQQLSST SSGSSNSSSE EEEIGPDRKV  120
DSTEEESVDE DDPPCNKNPK LENLSDDDGG NGSKKFGGGS SMMNFKTDHP YYEMVVKRSH  180
KTFMTIPKRF AKRTGIFSMK KMKVVNEEEK GYWRVEIVDM SGTIRITKGW AAFRTYNKIV  240
CGDSCRFKLI KPNILQVQKV PKHASLKSYH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065617.20.0B3 domain-containing protein At5g18000-like
TrEMBLA0A3Q7F6H31e-174A0A3Q7F6H3_SOLLC; Uncharacterized protein
STRINGSolyc02g081780.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11726413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-07B3 family protein