PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g027030.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 286aa    MW: 32387.7 Da    PI: 9.8685
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g027030.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33e-12119163347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+ E+ l++ + +++G g+Wk+I+r+    +t+ q+ s+ qky
  Sopen02g027030.1 119 PWTEGEHSLFLMGLNKFGRGDWKSISRHYVVSKTPTQVASHAQKY 163
                       7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.3842076IPR017884SANT domain
SMARTSM007171.22174IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-62374IPR009057Homeodomain-like
CDDcd001670.008592472No hitNo description
PROSITE profilePS5129415.607112168IPR017930Myb domain
SuperFamilySSF466895.83E-15114167IPR009057Homeodomain-like
SMARTSM007178.6E-7116166IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.6E-16117166IPR006447Myb domain, plants
CDDcd001671.88E-8119164No hitNo description
PfamPF002491.1E-9119163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-8119163IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDWPEFLESS NPQEPTIDLS QTNRWTPEEK QVFENAFSRF NNLGSQTFFE FVASKFPHKS  60
MEEMKNLYIN LFKEAEMENS SINTTNVVDN SSDKETNLND TPPPPIQITH SRPHRRGIPW  120
TEGEHSLFLM GLNKFGRGDW KSISRHYVVS KTPTQVASHA QKYFCRRSSK TPVDRRRPSI  180
NDIQTVTVNS TRTTTTTTAS NNNDQVGSSS RPFRYANYTF GGPTFANNSN GNFGIYHPGE  240
ASGSNSFIMK QNNNNNNNNL HRPVSPRPFL SMYSSSTIGG ITPKSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233758.11e-176transcription factor SRM1-like
TrEMBLK4BAA91e-174K4BAA9_SOLLC; Uncharacterized protein
STRINGSolyc02g082390.1.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-31MYB family protein