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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sopen02g028970.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
BBR-BPC |
| Protein Properties |
Length: 300aa MW: 33466.7 Da PI: 8.6782 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen02g028970.1 | genome | spenn | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 296 | 1.5e-90 | 11 | 300 | 27 | 301 |
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqls 115
m+++aerda+irern+al e+k a+aerdma lqrd+alaern+ + er+++++al l++ s++ +++g ++ sg+k+i + qq+
Sopen02g028970.1 11 TYMAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERNDAIAALRLQDSSTNdnnmVPDSPGNGTESGAKHIYNQQQMY 103
569******************************************************999888777664434456677777777776666533 PP
GAGA_bind 116 e.......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader............... 186
+ +ed+a++ +e +++ +i ++++ ke++++k+ + +++ k + + +++ ++
Sopen02g028970.1 104 RttadaahGSTEDPAAGYLKETDTSEAKIPKKVKRPKESRHNKQAKIPRVGKISADS------------LSMQVIATTsddwvnlqemdsdke 184
323444434455555554444445555555555555555555555555544444433............333333221233333444444445 PP
GAGA_bind 187 ...skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276
+ +++k+ +l+l ++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++Laa+G
Sopen02g028970.1 185 gdtQLTSWKD-NLGL-KINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAAQG 275
5544445543.5666.467************************************************************************** PP
GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301
ydls p+DLkdhWAkHGtn++ t++
Sopen02g028970.1 276 YDLSIPLDLKDHWAKHGTNRYSTLK 300
*********************9986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MMDHNNFTIK TYMAIMAERD AAIRERNMAL EERKRAFAER DMAMLQRDAA LAERNALIQE 60
RNDAIAALRL QDSSTNDNNM VPDSPGNGTE SGAKHIYNQQ QMYRTTADAA HGSTEDPAAG 120
YLKETDTSEA KIPKKVKRPK ESRHNKQAKI PRVGKISADS LSMQVIATTS DDWVNLQEMD 180
SDKEGDTQLT SWKDNLGLKI NFDESAMPVP VCSCTGTPQP CYKWGHGGWQ SACCTTTISM 240
YPLPQISNKR YSRVGGRKMS GGAFSKLLNR LAAQGYDLSI PLDLKDHWAK HGTNRYSTLK
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