PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g029130.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 182aa    MW: 20136.9 Da    PI: 7.4347
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g029130.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.5e-08433534
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                       C+ +e+  ++lfC  ++  lC+ C ++ H
  Sopen02g029130.1  4 LCDVCESAAAILFCAADEAALCRACDEKVH 33
                      7**************************999 PP
2zf-B_box29.41.7e-095292238
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                      e ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Sopen02g029130.1 52 EVPRCDICENSPAFFYCEVDGSSLCLQCDMMVHVGgkrtHS 92
                      789***************************99966566675 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
SMARTSM003361.3E-8147IPR000315B-box-type zinc finger
CDDcd000218.16E-7345No hitNo description
PfamPF006433.3E-6342IPR000315B-box-type zinc finger
SuperFamilySSF578458.24E-54888No hitNo description
PROSITE profilePS501199.3715196IPR000315B-box-type zinc finger
PfamPF006439.6E-85191IPR000315B-box-type zinc finger
SMARTSM003361.2E-105196IPR000315B-box-type zinc finger
CDDcd000213.99E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGIAKP NEVPRCDICE  60
NSPAFFYCEV DGSSLCLQCD MMVHVGGKRT HSRYLLLRQK VEFPGDKSGP TEELARKTLD  120
TGENKKDHSH SPNPMIKDNQ QNHRVSPILI SDGSADGHGK KDKMIDLNVK PSRFHGQASN  180
QD
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-131HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066178.11e-134B-box zinc finger protein 19-like
SwissprotC0SVM54e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLM0ZW201e-125M0ZW20_SOLTU; B-box zinc finger protein 23
STRINGPGSC0003DMT4000093281e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-75DBB family protein