PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g032870.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 319aa MW: 36334 Da PI: 6.7757

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g032870.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.5	1e-56	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL++kv + ++ + +i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg+r+nrat++gyWkatgkdke++ Sopen02g032870.1 16 LPPGFRFHPTDEELITHYLAPKVLDCSFCA-IAIGEVDLNKVEPWDLPWKAKMGEKEWYFFCMRDKKYPTGQRTNRATEAGYWKATGKDKEIF 107 79***********************888.78***********888999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++lvg+kktLvfykgrap+gekt+Wvmheyrl Sopen02g032870.1 108 K-SKTLVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 141 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.36	16	166	IPR003441	NAC domain
Pfam	PF02365	2.0E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
METVCGFGGQ EEEMELPPGF RFHPTDEELI THYLAPKVLD CSFCAIAIGE VDLNKVEPWD 60 LPWKAKMGEK EWYFFCMRDK KYPTGQRTNR ATEAGYWKAT GKDKEIFKSK TLVGMKKTLV 120 FYKGRAPRGE KTNWVMHEYR LDGKYSIHNL PKTAKNECVI CRIFKKNSGG KKIAISNLTR 180 SDSITDNSRS SNLPPLMDMS PYNKITTTAR SSGETCNSHV TCFSDSMEDQ KPQTYDHHHP 240 LSSSPVSVDF PQNVPNESMT YMGNFQYGDS GLMQDNSIMR LLIDNNYGSE SKQSLRGYED 300 HDINISSTGP VDIDCLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-53	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-53	13	172	17	174	NAC domain-containing protein 19
3swm_B	2e-53	13	172	17	174	NAC domain-containing protein 19
3swm_C	2e-53	13	172	17	174	NAC domain-containing protein 19
3swm_D	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_A	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_B	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_C	2e-53	13	172	17	174	NAC domain-containing protein 19
3swp_D	2e-53	13	172	17	174	NAC domain-containing protein 19
4dul_A	2e-53	13	172	14	171	NAC domain-containing protein 19
4dul_B	2e-53	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT740994	0.0	KT740994.1 Solanum lycopersicum NAC2-domain containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015064178.1	0.0	NAC domain-containing protein 92
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	K4BBX4	0.0	K4BBX4_SOLLC; NAC2-domain containing protein
STRING	Solyc02g088180.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-125	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]