PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g033980.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 239aa    MW: 27583 Da    PI: 8.0508
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g033980.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.31.2e-201966148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd+ll ++v+++G g+W++++r+ g++Rt+k+c++rw +yl
  Sopen02g033980.1 19 KGPWTPEEDKLLSEYVNLHGEGRWSSVSRCAGLNRTGKSCRLRWVNYL 66
                      79********************************************97 PP
2Myb_DNA-binding51.52.3e-1672116147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  Sopen02g033980.1  72 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 116
                       6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7961466IPR017930Myb domain
SuperFamilySSF466893.37E-3216113IPR009057Homeodomain-like
SMARTSM007171.1E-171868IPR001005SANT/Myb domain
PfamPF002493.9E-191966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-242073IPR009057Homeodomain-like
CDDcd001672.89E-132166No hitNo description
PROSITE profilePS5129424.79967121IPR017930Myb domain
SMARTSM007173.0E-1471119IPR001005SANT/Myb domain
PfamPF002493.3E-1472116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2474121IPR009057Homeodomain-like
CDDcd001673.77E-1076117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVRGMMGWGA NTNEQGWRKG PWTPEEDKLL SEYVNLHGEG RWSSVSRCAG LNRTGKSCRL  60
RWVNYLRPGL KRGHITPQEE GIIIELHALW GNKWSTIARY LPGRTDNEIK NYWRTHFKTK  120
VKVPVKQDKK RILRQMRNQT QQNYTNVSTT DMSPQAEEVI MIKSDNDNMF SINYNNDEDP  180
VELPPVTTTS DTWTENFPMD GLWNIDDELK VAIQNQAATA NCSYGTDYAV NLYNGGFIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25191217108B-MYB
1h8a_C6e-251912127128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065503.10.0myb-related protein 340
TrEMBLA0A3Q7F9J11e-177A0A3Q7F9J1_SOLLC; Uncharacterized protein
STRINGSolyc02g089190.1.11e-177(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.16e-72myb domain protein 121