PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g034630.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TALE

Protein Properties

Length: 726aa MW: 79310.2 Da PI: 7.3362

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g034630.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	519	556	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Sopen02g034630.1 519 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 556 664559******************************88 PP
2	BELL	121.4	3.9e-39	380	451	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai q+ Sopen02g034630.1 380 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIGAQL 451 589*****************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.1E-74	318	449	IPR006563	POX domain
Pfam	PF07526	3.6E-51	323	447	IPR006563	POX domain
PROSITE profile	PS50071	12.568	497	560	IPR001356	Homeobox domain
CDD	cd00086	4.34E-13	500	561	No hit	No description
SMART	SM00389	2.0E-9	500	564	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	502	567	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-28	503	566	IPR009057	Homeodomain-like
Pfam	PF05920	3.6E-18	517	556	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MGIATQPITL RPCHKYPVIH QVVENLNSMS QDYHHHSLFS FPNGFERSQA EQQQQQQQHQ 60 QAQQIRRDKL RVQGFEPFED ETSGLPTVYE TAGMLSEMFN FPPGNAATNA AELLETQFNP 120 NFRQPNPRIH AAAAMGNEWF GNHRQGMVVG GGASSQPLGY AKNHTDSMQL FLMNPQPRSP 180 SPSPPNSTSS TLHMLLPNPS STPTLQGFPN PAEGSFGQFM TWGNGGASAA TATHHLNAQN 240 EIGGVNVVES QGLSLSLSSS LQHKAEELQM SGEAGGMLFF NQGGSSTSGQ YRYKNMNMGG 300 SGISPNIHQV HVGYGSSLGV VNVLRNSKYA KAAQELLEEF CSVGRGKLKK NNNKAAANNP 360 SGGANNEASS KDVPTLSAAD RIEHQRRKVK LLSMLDEVDR RYNHYCEQMQ MVVNSFDLVM 420 GFGAAVPYTA LAQKAMSRHF RCLKDAIGAQ LKQSCELLGE KDAGTSGLTK GETPRLKMLE 480 QSLRQQRAFH QMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG 540 LSRNQVSNWF INARVRLWKP MVEDMYQQEA KDEDENSQSQ NSGNNIIAQT PTPNSLTNSS 600 STNITTTTAT TTTAPTTTTA LAAAETGTAA TPITVTSSKR SQINATDSDP SLVAINSFSE 660 NQAAFTTNIH DPDACRRGNF SGDDGTTTHN HMGSTMIRFG TTAGDVSLTL GLRHAGNLPE 720 NTHFFG

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MGIATQPITL RPCHKYPVIH QVVENLNSMS QDYHHHSLFS FPNGFERSQA EQQQQQQQHQ  60
QAQQIRRDKL RVQGFEPFED ETSGLPTVYE TAGMLSEMFN FPPGNAATNA AELLETQFNP  120
NFRQPNPRIH AAAAMGNEWF GNHRQGMVVG GGASSQPLGY AKNHTDSMQL FLMNPQPRSP  180
SPSPPNSTSS TLHMLLPNPS STPTLQGFPN PAEGSFGQFM TWGNGGASAA TATHHLNAQN  240
EIGGVNVVES QGLSLSLSSS LQHKAEELQM SGEAGGMLFF NQGGSSTSGQ YRYKNMNMGG  300
SGISPNIHQV HVGYGSSLGV VNVLRNSKYA KAAQELLEEF CSVGRGKLKK NNNKAAANNP  360
SGGANNEASS KDVPTLSAAD RIEHQRRKVK LLSMLDEVDR RYNHYCEQMQ MVVNSFDLVM  420
GFGAAVPYTA LAQKAMSRHF RCLKDAIGAQ LKQSCELLGE KDAGTSGLTK GETPRLKMLE  480
QSLRQQRAFH QMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG  540
LSRNQVSNWF INARVRLWKP MVEDMYQQEA KDEDENSQSQ NSGNNIIAQT PTPNSLTNSS  600
STNITTTTAT TTTAPTTTTA LAAAETGTAA TPITVTSSKR SQINATDSDP SLVAINSFSE  660
NQAAFTTNIH DPDACRRGNF SGDDGTTTHN HMGSTMIRFG TTAGDVSLTL GLRHAGNLPE  720
NTHFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	506	563	5	62	Homeobox protein Meis2
3k2a_B	3e-16	506	563	5	62	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU352654	0.0	EU352654.1 Solanum lycopersicum BIPINNATA (BIP) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015066078.1	0.0	BEL1-like homeodomain protein 2
Refseq	XP_027770365.1	0.0	BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-170	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	M1AMS7	0.0	M1AMS7_SOLTU; Uncharacterized protein
STRING	Solyc02g089940.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-151	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]