PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g035000.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 262aa MW: 28612 Da PI: 8.9435

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g035000.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	4e-39	51	109	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ Sopen02g035000.1 51 SENLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSI 109 57899***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.7E-33	53	108	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-24	54	104	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.394	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MIQELFAGNT TLIGDNNISK LSNITPSSSP ISCTTSNSNI APAAAAANAN SENLRCPRCD 60 SPNTKFCYYN NYNLTQPRHF CKTCRRYWTK GGALRNVPIG GGCRKNKSIT AAKSAAAKFK 120 NSLPFEFIGK SGIFGGFEQE IIPSNNNNPF LFSSPHQNHN PILSLLKGNH DKSIGVNQFP 180 SNNGLWKHNY EENVGEVPNS RGFQELYQRL KASTNRCYTD NIHGPSSSMI LDSAPVTGGE 240 LGCWNPTLST WLDLPTANGA YL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015065082.1	0.0	dof zinc finger protein DOF3.7-like
TrEMBL	A0A3Q7FC59	1e-173	A0A3Q7FC59_SOLLC; Uncharacterized protein
STRING	Solyc02g090310.1.1	1e-174	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-31	DOF zinc finger protein 1