PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g035340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 526aa    MW: 59261 Da    PI: 8.3652
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g035340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.52.4e-18167257199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f k l++s+v++  ++ lp +f+++h    ++++ ++le+e+g+++e+k+i +k++    l++GW++++ a++L egD++vF+l++ ++f  +
  Sopen02g035340.1 167 FMKLLVRSHVGSCFWMGLPVPFCKNHLP--RKDTPVILESETGEEFEIKYIAEKTG----LSAGWRKYAAAHKLVEGDVLVFQLVEPTRF--K 251
                       899********************99953..45567***************777777....***********************9876666..8 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v v+r+
  Sopen02g035340.1 252 VYVIRA 257
                       888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-22160258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-19162258IPR015300DNA-binding pseudobarrel domain
CDDcd100176.10E-25165256No hitNo description
SMARTSM010191.7E-21167258IPR003340B3 DNA binding domain
PfamPF023629.5E-16167257IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183167258IPR003340B3 DNA binding domain
PfamPF052662.4E-7401502IPR007930Protein of unknown function DUF724
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MKIKVVHRSE PPNQERVSIS YPDMPKKEVF DEEQENQQLG TQEPEPEPDF AIPKLGNDNL  60
SLVDASIPIN SITPSTQTPI SSLLGKRRRK PKEMVDQIST IPFRKKRVFK KQSQSSNGVA  120
VAGCRSISTK LERAAADGSG SATQMKSPII IRAEEFLLSI GNEYPSFMKL LVRSHVGSCF  180
WMGLPVPFCK NHLPRKDTPV ILESETGEEF EIKYIAEKTG LSAGWRKYAA AHKLVEGDVL  240
VFQLVEPTRF KVYVIRANDL KEVDGALSLL NLDAPAKQSD AEGAIGNNIK KRQKKSLPLT  300
VVQKRRRKED LSKQLVPLEA QSGNDSDEVA SEILEGSRSS GLAVNFGDIK SLEEFHILVN  360
GACIDSELPE HIRRKYYELC CSKNAFLHDR LLQGLHCKLV AGMIFEVVNI ADMVRACKLT  420
TPRKEFDKWE KSLKSFELLG MNVGFLRTRL RWLLSLAFDS EGASDTKRYW DAKKEWSRAE  480
DEIRNLEMKL EELKQASGKY VADVEALKSK AESYELMFQG EVNAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289307KKRQKKSLPLTVVQKRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066988.10.0B3 domain-containing protein Os01g0234100-like isoform X1
RefseqXP_015066989.10.0B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A3Q7FY770.0A0A3Q7FY77_SOLLC; Uncharacterized protein
STRINGSolyc02g090710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72042328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-36B3 family protein