PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g035400.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 201aa    MW: 23160.7 Da    PI: 6.5147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g035400.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-1889137355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr+++ +g+W+AeIrdp     +  +r +lg+f tae+Aa+a+++ + +++g
  Sopen02g035400.1  89 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFVTAEDAARAYDKKAVEFRG 137
                       8*******.**********7.....337**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-3488151IPR001471AP2/ERF domain
PROSITE profilePS5103223.20988145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3188146IPR001471AP2/ERF domain
PfamPF008471.5E-1089137IPR001471AP2/ERF domain
PRINTSPR003671.0E-1089100IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2189147IPR016177DNA-binding domain
CDDcd000184.00E-2989147No hitNo description
PRINTSPR003671.0E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDNLCSFTHK LTHQQESHYM VSALKHVFSG AAVDGRADGE AAQLLWEVEN AATSDNPMPR  60
RSINVHPVHV ELESGKKKQR RRRNTKKEFR GVRQRPWGKW AAEIRDPHKA QRLWLGTFVT  120
AEDAARAYDK KAVEFRGNKA KTNFPISEYI DDHDNSSPMM IVEEHENDQN VMNGDDDNGD  180
DFWATLEDDR LVKFITQDMS H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2187146464ATERF1
3gcc_A2e-2187146464ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065485.11e-151ethylene-responsive transcription factor ERF095-like
TrEMBLA0A3Q7FCG61e-133A0A3Q7FCG6_SOLLC; Uncharacterized protein
STRINGSolyc02g090770.1.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-28ERF family protein