PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g035430.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 212aa    MW: 24254.1 Da    PI: 4.6866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g035430.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1888137356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                       ++GVr+++ +g+W+AeIrdp     +  +r +lg+f tae+Aa+a+++ + +++ge
  Sopen02g035430.1  88 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFATAEDAARAYDKKAIEFRGE 137
                       8*******.**********7.....337*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.2E-3687150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3187144IPR001471AP2/ERF domain
PROSITE profilePS5103223.52587144IPR001471AP2/ERF domain
PfamPF008471.6E-1188137IPR001471AP2/ERF domain
PRINTSPR003676.5E-118899IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-2288145IPR016177DNA-binding domain
CDDcd000181.25E-3288146No hitNo description
PRINTSPR003676.5E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTTLCEDSLL EQENVSYTLT HKLTQEQENY YMVSALRHVA SGTGDDGEAA QLLLEVENAS  60
SGNLPCRSID VELEKGKKRK KRNTKKEFRG VRQRPWGKWA AEIRDPHKAQ RLWLGTFATA  120
EDAARAYDKK AIEFRGERAK TNFPITEYAA VNDEINMSPT VVMEEEKELI QVTNGENRSN  180
SMQNCDEDDF WETLEDDALV KQITQNMILY SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2386145161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770031.11e-143uncharacterized protein LOC107010195
TrEMBLM0ZXU07e-99M0ZXU0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000102971e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.18e-28ERF family protein