PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g036380.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 344aa    MW: 39187.4 Da    PI: 6.8469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g036380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-13173218454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h ++Er+RR+++ ++f  L ++lP +     kK++Ka+iLe+A++++k+L
  Sopen02g036380.1 173 DHIIAERKRREKLSQRFVALSTILPGL-----KKVDKASILEQAIKHVKDL 218
                       6999***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-15173232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10173218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-16174233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-12174223No hitNo description
SMARTSM003536.8E-13175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDNSSLSQWF SRTEEGVFYS NKNNSIDDFT TQKSTISEDQ ETSELSITPD SARSNSRSYF  60
HKEISISKAS KIDFSLVTPM ENFPIGSKRP ATDHHHQPKL NKISSSFLSF NNNNNNTESV  120
FPSHQGCKIE AMDDMYLCDS SDQMFYPCVK SNGCYDAKDK KGGKRIPSVE LQDHIIAERK  180
RREKLSQRFV ALSTILPGLK KVDKASILEQ AIKHVKDLKE KVQLLEEEKK SVMFMNKSKL  240
ETEEYTSSEE NNNDSDLPAD IEVRFSDNNV LIRITCARRN AFVLNIHSEI EKLHLTIVQS  300
CMMPFGKQAI DITLVAQMEE SFCMTLKDVA KHVRMVTGRL MTQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182ERKRRE
2178183RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065347.10.0transcription factor bHLH25-like
TrEMBLM1D0K10.0M1D0K1_SOLTU; Uncharacterized protein
STRINGSolyc02g091800.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136021316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-35bHLH family protein