PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g036640.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRF
Protein Properties Length: 601aa    MW: 64645.9 Da    PI: 8.2716
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g036640.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.71.1e-24212255144
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                       d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e
  Sopen02g036640.2 212 DPEPGRCRRTDGKKWRCSREAVPDQKYCERHINRGRHRSRKHVE 255
                       79****************************************98 PP
2QLQ61.72.1e-21142178137
               QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       ++FT++Q+++L++Q+l+yK+++an PvP++Ll +i+k
  Sopen02g036640.2 142 GPFTPSQWMELEHQALIYKHFVANIPVPHHLLIPIKK 178
                       59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.9E-13142178IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.511143178IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.2E-15143176IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.563212256IPR014977WRC domain
PfamPF088799.4E-21213255IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MDFGGLMTME TAQQSETSNG SGQLKQQRSG PCDDNIWRPS KLPKPADDLS AFCKQQGPTS  60
TLFMRSDSPN DGRGHSTMLS FSSNKSEEIP FLSTNNVSAQ HSSTNLPFPL LDSGSYNTRA  120
ASAYASGGSN ENTPGSFSRF RGPFTPSQWM ELEHQALIYK HFVANIPVPH HLLIPIKKSV  180
NPYAFSGLSA DPYASSNWGW GTFHLGFAGN TDPEPGRCRR TDGKKWRCSR EAVPDQKYCE  240
RHINRGRHRS RKHVEVQNGH AVSGSTTSKV ASVAPSSSAT VISSSGTLLN NGGASNSLGT  300
VQQQLNSLQP SAANPNTEQL VNRMLGHRGA SVISPTICVK PKDSAISVQK QHNGVELSSR  360
TNFGLVSSDS LLNPSQRNSF VNPKNPIAFL NFNDQERSEQ HPVHHFIDGW AKEQSSRAST  420
CWPDQLKDWT QLSMSIPMTA SDFASSSSSP RQEKLTLSPL RVSCNVDPIQ MGLGMTSSCG  480
EPMQKTASWV PVCWEHSLGG PLGEVLNSTA GNSGDGKSVS ALNLGTEVWD NSPSFGSSPT  540
GVLQKTTFVS LSNSSSGSSP RGDSKKVHDG IGMCDEVIGL TVASSVCIPS MEVSCLIKNK  600
H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063897.10.0growth-regulating factor 1-like isoform X2
TrEMBLA0A3Q7FYY80.0A0A3Q7FYY8_SOLLC; Uncharacterized protein
STRINGSolyc02g092070.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-98growth-regulating factor 1