PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g037120.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 218aa    MW: 23983.3 Da    PI: 7.3662
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g037120.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.82.6e-312103197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+ye+  r+ +Pv+Gavg++++++++++
  Sopen02g037120.1   2 SCNGCRVLRKGCSDNCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEGAGRTVNPVNGAVGLLWTGNWHVC 94 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelall 97 
                       q+++e++l+
  Sopen02g037120.1  95 QAAVETVLR 103
                       ***999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.8821107IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-262101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDNCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFQSLLYE GAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI SEFLGASVEI  120
DEVSDCTDVF KLQDPSLNMR PKMQKRRRSL EETSMLDLSL TPGFNQKVYN SHPLPENHRR  180
PGTPSMNSEE SGTTTCFESS AVIGDHQGKE PKLLSLFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146PKMQKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063806.11e-163LOB domain-containing protein 37
SwissprotQ9FN114e-80LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A3Q7FBF81e-160A0A3Q7FBF8_SOLLC; Uncharacterized protein
STRINGSolyc02g092550.2.11e-160(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-82LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]