PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g037840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 362aa    MW: 40317.1 Da    PI: 4.98
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g037840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.9e-16132178455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Sopen02g037840.1 132 VHNLSEKRRRSRINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 178
                       6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-19125188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-20125188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-16131182No hitNo description
PfamPF000101.6E-13132178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-18134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MANNNVYHHN ANFSLTDPDP EPDDISVFLR HILLPSSSSS SSNFMALKGN EMQYSSSLPH  60
LMPNNNQQGN LSSMMNSSAC GIFSSSSSVG TMDYDPDEYE CESEDGTEDL GAEASVQPPS  120
RNTSKRSRAA EVHNLSEKRR RSRINEKMKA LQKLIPNSNK TDKASMLDEA IEYLKQLQLQ  180
VQMLTMRNGL NMYPLGLPRM LQQNQLPQQK IGLCEGNAFT NAKVAGNLQV NQDASLNAIF  240
NPTENCTETK VTLPITMSNV NRSDSAFELE SSMNIHLDPF QLSRSTSKEI WREDGLPLYG  300
MNELMTKTAS TGSNVVFSVP LDTDASSMKR NTREACLLRY QFGAVNETNL DCDQLLSPQL  360
YR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-179HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065179.10.0transcription factor SPATULA isoform X2
TrEMBLK4BDC40.0K4BDC4_SOLLC; Uncharacterized protein
STRINGSolyc02g093280.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-46bHLH family protein