PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g038800.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 254aa    MW: 28761.4 Da    PI: 8.5872
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g038800.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003396118223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ C+++++++ +L  H +  H
  Sopen02g038800.1  96 SCSVCSRVYPTSRLLSIHVSEaH 118
                       6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.576893IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807093IPR007087Zinc finger, C2H2
SMARTSM003555.495118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097118IPR007087Zinc finger, C2H2
SMARTSM003550.49133158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAMEFDRQIE LGFPFWSPTR RRFGPDDPFF AYGNIQRELL AKQVALDLTE EENQLVQNTI  60
TDDEISNLFC PIIGCGAQMK NLDDFEDHYV TRHTASCSVC SRVYPTSRLL SIHVSEAHDS  120
FFQAKAARGF PMYECLVEGC DVKLKSYNSR QQHLVDKHKF PASYEFFRKA RPSKKQRLKP  180
HHKQASNKTQ ETSSAMQVEE ETIDNLVSAV SKLTTSDSPS AISFGRSRAR GLSFVPRAVN  240
RQRGPVTSTG GTKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063415.10.0zinc finger protein 511
TrEMBLA0A3Q7FEC80.0A0A3Q7FEC8_SOLLC; Uncharacterized protein
STRINGSolyc02g094170.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-105zinc ion binding;nucleic acid binding;zinc ion binding