PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g038990.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 678aa MW: 75200.1 Da PI: 5.8522

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g038990.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	432.9	2.4e-132	313	677	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsPil 91 lv+lLl+cAeavs++d la+++L +l+ ++p gd+mqR+a++fteAL arla + + ++ p++ + + ns e l++++++++++P++ Sopen02g038990.1 313 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDAMQRVASCFTEALTARLAATLATKPSTSVPKPFNpfPPNSLEILKIYQILYQACPYV 405 68**************************************************955444444444443301456************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs e+++etg+ L+++A++l+vpfef++ v + Sopen02g038990.1 406 KFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----YPEAVRETGRCLTELAQSLHVPFEFHP-VGE 493 ******************************************************....9**********************.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +ledl++++++ + gEalaVn+v +lhr++ ++ ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p Sopen02g038990.1 494 QLEDLKPHMFNRRIGEALAVNSVNRLHRVP--GN----CIGNLLGMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPG 580 ***************************9..33....4446*********************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 +s++r+k+E+ ++g+ei+n+v+ceg er rhe+l+kWr+ +e GFk v+ls +a++q k ll ++ dgy++ e++g+l+lgW+dr+++++ Sopen02g038990.1 581 DSSQRAKLEQYIFGPEIMNIVSCEGMERMVRHERLGKWRRVMEGKGFKGVALSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGWQDRAILAA 673 ***************************************************************************************** PP GRAS 371 SaWr 374 SaWr Sopen02g038990.1 674 SAWR 677 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.335	287	657	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-130	313	677	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MGSLKNDIIK NEVGSEITSF KSQNSYSKLL PEDSLASCES KKVTPISSDF ELDCGSLIPT 60 SLTFPPKFEG GGDVEIQSPD NSIWESFFAD QLEADFMISS PVRNLSSPST FSTTTHNNNL 120 YTHHHQGIHG QSMMMCSPPR SPLRPNNYNS TNKGKGLSPL QKVFNSPNNQ FMQIESFNLP 180 ALESFLDDDL ASEYSTLKVS DVGSSSESLS VIPDFLECLA LPNSSSNMSG SFMGSLLSNT 240 SAGQVDDEIF HTVSIAPLSQ QLHQERQHEK QQKQIPTHVQ LPSTQQQYTQ IINHNLVVAA 300 PDQMQEQDSG LQLVHLLLAC AEAVSKEDYM LARRYLHHLN RVVTPIGDAM QRVASCFTEA 360 LTARLAATLA TKPSTSVPKP FNPFPPNSLE ILKIYQILYQ ACPYVKFAHF TANQAIFEAF 420 EAEERVHVID LDILQGYQWP AFMQALAARP GGAPFLRITG VGSYPEAVRE TGRCLTELAQ 480 SLHVPFEFHP VGEQLEDLKP HMFNRRIGEA LAVNSVNRLH RVPGNCIGNL LGMIRDQAPN 540 IVTIVEQEAS HNGPYFLGRF LEALHYYSAI FDSLDATFPG DSSQRAKLEQ YIFGPEIMNI 600 VSCEGMERMV RHERLGKWRR VMEGKGFKGV ALSANAVTQS KILLGLYSCD GYKLTEDNGC 660 LLLGWQDRAI LAASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MGSLKNDIIK NEVGSEITSF KSQNSYSKLL PEDSLASCES KKVTPISSDF ELDCGSLIPT  60
SLTFPPKFEG GGDVEIQSPD NSIWESFFAD QLEADFMISS PVRNLSSPST FSTTTHNNNL  120
YTHHHQGIHG QSMMMCSPPR SPLRPNNYNS TNKGKGLSPL QKVFNSPNNQ FMQIESFNLP  180
ALESFLDDDL ASEYSTLKVS DVGSSSESLS VIPDFLECLA LPNSSSNMSG SFMGSLLSNT  240
SAGQVDDEIF HTVSIAPLSQ QLHQERQHEK QQKQIPTHVQ LPSTQQQYTQ IINHNLVVAA  300
PDQMQEQDSG LQLVHLLLAC AEAVSKEDYM LARRYLHHLN RVVTPIGDAM QRVASCFTEA  360
LTARLAATLA TKPSTSVPKP FNPFPPNSLE ILKIYQILYQ ACPYVKFAHF TANQAIFEAF  420
EAEERVHVID LDILQGYQWP AFMQALAARP GGAPFLRITG VGSYPEAVRE TGRCLTELAQ  480
SLHVPFEFHP VGEQLEDLKP HMFNRRIGEA LAVNSVNRLH RVPGNCIGNL LGMIRDQAPN  540
IVTIVEQEAS HNGPYFLGRF LEALHYYSAI FDSLDATFPG DSSQRAKLEQ YIFGPEIMNI  600
VSCEGMERMV RHERLGKWRR VMEGKGFKGV ALSANAVTQS KILLGLYSCD GYKLTEDNGC  660
LLLGWQDRAI LAASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-97	303	676	7	377	Protein SCARECROW
5b3h_D	7e-97	303	676	7	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015063237.1	0.0	DELLA protein RGL1-like
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	K4BDM9	0.0	K4BDM9_SOLLC; Uncharacterized protein
STRING	Solyc02g094340.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12566	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-98	RGA-like 1

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]