PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g039080.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 146aa    MW: 16474.4 Da    PI: 8.2299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g039080.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000272042123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C +C++ F ++  L  H++ H
  Sopen02g039080.1 20 FSCLYCSRKFCTSQALGGHQNAH 42
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-51747No hitNo description
PROSITE profilePS5015710.972047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MLEPPMIPKP KVAPSSSRMF SCLYCSRKFC TSQALGGHQN AHKRERAASR RNMFSTDPNN  60
NNNRLQFHFL HNNNENMPQQ HNIINANYSC QLQPPPPSNN NLCSSSSAVF YPPPDHGYFT  120
TTTTGEDLSL SPIDEPQLNL DLTLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064936.11e-104zinc finger protein KNUCKLES-like
TrEMBLM1BSW63e-54M1BSW6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000521706e-55(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-17C2H2 family protein