PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g001530.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ERF

Protein Properties

Length: 157aa MW: 17980 Da PI: 9.1876

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g001530.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.2	4.9e-19	31	82	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr + +g+++AeIrdp+ +g +r +lg+f+tae+Aa+a+++a+ +l+g+ Sopen03g001530.1 31 KYRGVRKRT-WGKFAAEIRDPTRQG--ARQWLGTFDTAEDAARAYDKAAFNLRGH 82 8***887.******96544..************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.723	31	89	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.4E-31	31	91	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-35	31	95	IPR001471	AP2/ERF domain
Pfam	PF00847	2.9E-12	31	82	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-23	31	90	IPR016177	DNA-binding domain
CDD	cd00018	1.48E-29	31	90	No hit	No description
PRINTS	PR00367	2.8E-10	32	43	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-10	55	71	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MDSSSSSSSS KGKKVIQLEK ENSKDSNDLI KYRGVRKRTW GKFAAEIRDP TRQGARQWLG 60 TFDTAEDAAR AYDKAAFNLR GHLATLNFPN EYYSKLNDPH YYNYRTSLNV NIPSRSLERG 120 ISSIGHQDKE IIEFEYLDDS VLEELLGAED PKKIIRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	7e-30	31	141	14	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004234235.3	1e-113	ethylene-responsive transcription factor ERF098-like
Refseq	XP_027771791.1	1e-113	ethylene-responsive transcription factor ERF098-like
Swissprot	Q9LTC5	3e-45	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A3Q7FEY8	1e-111	A0A3Q7FEY8_SOLLC; Uncharacterized protein
STRING	Solyc03g005510.1.1	1e-112	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	4e-38	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]