PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g002160.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 309aa MW: 35922.2 Da PI: 9.0182

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g002160.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.5	9.3e-31	62	115	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+a+++LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Sopen03g002160.1 62 PRLRWTPELHLSFVSAIDRLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 115 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-28	58	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.979	58	118	IPR017930	Myb domain
SuperFamily	SSF46689	3.76E-14	61	116	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-22	62	117	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-8	63	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MTSDSIDLNE EVGDQEGIEV IISDESHEKI IDENNNNNNN STSCGDYENN KRVRQYVRSK 60 LPRLRWTPEL HLSFVSAIDR LGGQERATPK LVLQMMNVRG LSIAHVKSHL QMYRSKKLGE 120 FGQVLGHAYR TNNQGRSYLY GKLSQRLFNP LQDFKMKNGA IVLARNFNDD DNHFQNSFAK 180 TPYETKEKFP RYLENHEICP VRQRHFHEEK RWPPCEFNQN KLNSQSLFHQ NGPKWSCTYN 240 SLGPKFKTPF RFEMKQDKMF IKEKDYLLPD LQLGLSTTNQ DNNNSKEKNS SDINTMLSLS 300 LPSYSSSAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	63	117	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	63	117	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	1e-141	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015068459.1	0.0	uncharacterized protein LOC107012991
TrEMBL	K4BE38	0.0	K4BE38_SOLLC; Uncharacterized protein
STRING	Solyc03g006150.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5516	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	5e-36	G2-like family protein