PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g002820.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26389.5 Da    PI: 10.0907
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g002820.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.22.2e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++ rqvtfskRrng+ KKA+ELSvLCdaeva iifs++g+l+e++s
  Sopen03g002820.1  9 KRIENSTSRQVTFSKRRNGLTKKAYELSVLCDAEVAFIIFSHKGRLFEFAS 59
                      79***********************************************86 PP
2K-box71.52.6e-24851721097
             K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                        e+ +e+l++e a++ k+ie L+ ++R+l+G++L+s+s+ eL+ + +qL++ lk iR++K +l++e+ie+l+ ke+ l ++n +Lr+k
  Sopen03g002820.1  85 LEHYMENLKNETANMAKKIEILEISKRKLMGQGLGSCSMDELEDIDSQLQRTLKIIRARKAQLFKEEIENLKAKERLLLQQNASLREK 172
                       466789********************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.595161IPR002100Transcription factor, MADS-box
CDDcd002651.21E-40370No hitNo description
PRINTSPR004041.8E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-32389IPR002100Transcription factor, MADS-box
PfamPF003192.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.3E-2487173IPR002487Transcription factor, K-box
PROSITE profilePS5129714.11689179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVRGKVEMKR IENSTSRQVT FSKRRNGLTK KAYELSVLCD AEVAFIIFSH KGRLFEFASS  60
NMQKIIERYR RRARETTTVD KSTELEHYME NLKNETANMA KKIEILEISK RKLMGQGLGS  120
CSMDELEDID SQLQRTLKII RARKAQLFKE EIENLKAKER LLLQQNASLR EKCGLRPMVS  180
ESAPAPAPEP IPAPPSTPPA QSKERGNCSK STKSWEVETE LFIGLPQTRC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-20169169Myocyte-specific enhancer factor 2B
1tqe_Q2e-20169169Myocyte-specific enhancer factor 2B
1tqe_R2e-20169169Myocyte-specific enhancer factor 2B
1tqe_S2e-20169169Myocyte-specific enhancer factor 2B
5f28_A3e-20169169MEF2C
5f28_B3e-20169169MEF2C
5f28_C3e-20169169MEF2C
5f28_D3e-20169169MEF2C
6c9l_A2e-20169169Myocyte-specific enhancer factor 2B
6c9l_B2e-20169169Myocyte-specific enhancer factor 2B
6c9l_C2e-20169169Myocyte-specific enhancer factor 2B
6c9l_D2e-20169169Myocyte-specific enhancer factor 2B
6c9l_E2e-20169169Myocyte-specific enhancer factor 2B
6c9l_F2e-20169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133840.0BT013384.1 Lycopersicon esculentum clone 135524R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069157.11e-170MADS-box protein AGL42-like
SwissprotQ9FIS16e-78AGL42_ARATH; MADS-box protein AGL42
TrEMBLW5S1851e-148W5S185_SOLLC; MADS-box transcription factor FYFL
STRINGSolyc03g006830.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.34e-72AGAMOUS-like 42