PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g002910.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 155aa    MW: 17543.2 Da    PI: 7.0284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g002910.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.4e-054381955
                      HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       ++ Lr+llP       ++K s ++   +A +YIk++q
  Sopen03g002910.1  4 LYSSLRSLLPLqY---VKGKRSVSDHMHEAANYIKEMQ 38
                      5899*******66...9*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.746137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.18E-6457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-5559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MAALYSSLRS LLPLQYVKGK RSVSDHMHEA ANYIKEMQGN IKELEKRRDL LMKSIRHGNE  60
NADKNNRFTD CTVTVSPWLQ EGIEISINVD CEGKIFPLSK ILGELLKQGL NVVSCVSAKA  120
DQRSLYTIHT EACDMNNIDH LALQQKVIDM INLDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069281.11e-112transcription factor bHLH36-like
TrEMBLA0A3Q7FDI61e-109A0A3Q7FDI6_SOLLC; Uncharacterized protein
STRINGSolyc03g006910.2.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-30bHLH family protein