PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g003340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 355aa    MW: 40250 Da    PI: 6.4518
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g003340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29143204159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK++ g+++pr+YYrCt +   gC + k+v+rs+edp+++e+tY+g+H+++
  Sopen03g003340.1 143 LDDGYSWRKYGQKDILGAKHPRGYYRCTLRhvqGCLAMKQVQRSDEDPNIFEVTYRGRHTCN 204
                       59**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.502138201IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-28141204IPR003657WRKY domain
SuperFamilySSF1182908.76E-26142205IPR003657WRKY domain
SMARTSM007742.8E-40143205IPR003657WRKY domain
PfamPF031062.1E-26144203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDNYGADNNS HEINRLVGHE LTQGRDLVQQ LQLHLNAPNY NSSSSSENTR EFLLHNIQSK  60
FDRALSLLQC NTINGDNSNS LLPPSNSPAI PIIGMSDSPR SSEDSDRDLE PKEHHATRKR  120
KSSTPRWIKQ VHIQPGAPIE GTLDDGYSWR KYGQKDILGA KHPRGYYRCT LRHVQGCLAM  180
KQVQRSDEDP NIFEVTYRGR HTCNQGGGAS VSNVNPAPPP LPLPLVIHQI QEPNIGNHEQ  240
YQQLNQNSNE ILLNFQKSLS ISKDDFNFKN THHDQPNNVP YIPSFNNYPS SSSNDHQDYN  300
FLNNSSTIPN NNFVESFPPS FNNMSTGTSQ QNEADYQFNS MGFESNFPYD YQRFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19143203868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121TRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069407.20.0probable WRKY transcription factor 30
TrEMBLA0A3Q7FDQ30.0A0A3Q7FDQ3_SOLLC; Uncharacterized protein
STRINGSolyc03g007380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-40WRKY family protein