PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g004850.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 340aa    MW: 37503.8 Da    PI: 4.9378
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g004850.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.11.1e-36261172102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+++ed++++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++sF++g++++l
  Sopen03g004850.1  26 FLTKTYQLIEDQSIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDSFRRGERSQL 109
                       9*****************************************************************99.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                        +i+r+k 
  Sopen03g004850.1 110 VDIQRRKV 117
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3717109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-5622115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.98E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.1E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.1E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF1014472.2E-5146156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MTPQPIDRNK GETTAGETPR SVPTPFLTKT YQLIEDQSID DVISWNEDGS TFIVWNPTEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDS FRRGERSQLV DIQRRKVATP  120
IATPSAAATA VAIVAAPPQP PPPPPPPPPP PPPPPPAQPP VAVSTSDSCE EQVLSSNSSA  180
GSTAELLGEN ERLRLENLQL NKELNQMKKL CGNIYGMMST YALPSSSGNQ SAESSSPSLK  240
PLDLLGTERS VGESQVKAVE DRESQEVPEE AQARLFGFSI GMKRVREGEQ AMAEHSHDLR  300
LRQPGTTDVK VEPSDQESNG ESEERSWLLH CGGRNQRTCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-231911523129Heat shock factor protein 1
5d5v_B6e-231911523129Heat shock factor protein 1
5d5v_D6e-231911523129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067295.10.0heat stress transcription factor B-2a
TrEMBLA0A3Q7FF100.0A0A3Q7FF10_SOLLC; Uncharacterized protein
STRINGSolyc03g026020.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-56heat shock transcription factor B2A