PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g005250.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 431aa    MW: 47341.2 Da    PI: 7.6149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g005250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.5e-08109130426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       + C+++ + G C yG++C++ H+
  Sopen03g005250.1 109 KVCNYWVK-GNCTYGNTCRYLHS 130
                       68******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.482449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.2772450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549105132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7106130IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5107131IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5108130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-6109129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.108.4E-17130267IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.7E-6136175IPR001680WD40 repeat
SuperFamilySSF509783.66E-43138425IPR017986WD40-repeat-containing domain
PfamPF004004.7E-6139175IPR001680WD40 repeat
PROSITE profilePS5008213.917143184IPR001680WD40 repeat
PROSITE profilePS5029419.38143391IPR017986WD40-repeat-containing domain
PRINTSPR003201.1E-6162176IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780162176IPR019775WD40 repeat, conserved site
SMARTSM00320160215251IPR001680WD40 repeat
SMARTSM003202.9E-4258295IPR001680WD40 repeat
PfamPF004000.0011260295IPR001680WD40 repeat
PROSITE profilePS5008212.58265304IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.8E-28268425IPR015943WD40/YVTN repeat-like-containing domain
PROSITE patternPS006780282296IPR019775WD40 repeat, conserved site
PRINTSPR003201.1E-6282296IPR020472G-protein beta WD-40 repeat
SMARTSM003204.0E-4298335IPR001680WD40 repeat
PfamPF004000.0064300334IPR001680WD40 repeat
PRINTSPR003201.1E-6322336IPR020472G-protein beta WD-40 repeat
SMARTSM0032014339382IPR001680WD40 repeat
SMARTSM003204.1385422IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEMDGSKRVF QRLGPSSQGD NSNNKQQKVC FHWRAGRCNR FPCPFLHREL PGPPQQQQHA  60
AGNGMSSSKR PHGFSDDNRG SGMRRNPNFN NTWGRTAAGG GAVVRKTEKV CNYWVKGNCT  120
YGNTCRYLHS WTTGDCFTLL TTLEGHQKVV TGIALPSGSD KLYSGSTDKS VRVWDCQSGQ  180
CAGVVNFDGE VGSMLSEGPW IFVGLTNLVK AWNTQTGTDL SLNGPVGQVY ALVVGNDMLL  240
AGTEDGILAW KYNGSTNNFD PIKALTGHTH HVVSLVVGAN RLYSGSMDNS IRVWNLETLE  300
CLQILTDHTS VVMSVLCWDQ FLLSCSLDKT IKVWAANDSG NLEVTYTHQE DCGVLTLCGM  360
HDSEAKPVLL CSRNDNTIRV YDLPSFSERG KIFSKEGVRR IEIGPAGLFF TGDESGQVRV  420
WKWSTESSST S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-201404258323Tako8
6g6n_A1e-201404258323Tako8
6g6n_B1e-201404258323Tako8
6g6n_C1e-201404258323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071162.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A3Q7G4750.0A0A3Q7G475_SOLLC; Uncharacterized protein
STRINGSolyc03g026350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1