PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g005340.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 237aa    MW: 27377.9 Da    PI: 7.7134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g005340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.4e-061311681254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L++A+eYI+ L
  Sopen03g005340.1 131 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIEYINFL 168
                       67788899********998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.15119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.63E-6129172No hitNo description
Gene3DG3DSA:4.10.280.101.8E-9129181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-12129186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0076130174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MLQEKLNSRE NYPNHNELKM NFSSIISEDN SLIKPIMNQD FTNYYSDLLQ TLFANTDLHE  60
EQPQQQSFNY PSSSINHRQK LKDFVPSLPK FDIEEIGESK LSSITKNNTN EQTNKRQRIE  120
TPSSLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLQE AIEYINFLHD QVNVFSNRYM  180
KNRPPTQHQQ VKELQEGLKQ GLRSKGLCLV PISSTFPLAA ETTMEFWTPT LMGTTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-149HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069322.11e-174transcription factor bHLH112-like
SwissprotQ94JL32e-46BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A3Q7FHS11e-169A0A3Q7FHS1_SOLLC; Uncharacterized protein
STRINGSolyc03g031450.2.11e-170(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.17e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]