PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g006640.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20665.3 Da    PI: 5.4321
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g006640.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.22e-081658244
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                      +i+++++r+vtfskR+  + K A+ +   C++++ +i   ++g
  Sopen03g006640.1 16 KIQDETKRKVTFSKRLPSLYKNASKIVRACNVDIGIISSCPSG 58
                      799*********************************9888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.208759IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-4767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-13878IPR002100Transcription factor, MADS-box
PfamPF003199.3E-111659IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEDKKTAGRQ KIPIEKIQDE TKRKVTFSKR LPSLYKNASK IVRACNVDIG IISSCPSGRN  60
QYSYVHPTTA VVIDHFVNPT MELDLGTRLV AENARNIAIE NNIRLNELEA REAAEKEKVR  120
SLEQMNNARG KCWWESIDQI DAENLTTFET TLNFAEGILK DQLKKLEIGT SSSSEAPPEN  180
EDN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068598.11e-134agamous-like MADS-box protein AGL29
RefseqXP_015068599.11e-134agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7FFW51e-127A0A3Q7FFW5_SOLLC; Uncharacterized protein
STRINGSolyc03g033900.1.11e-127(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-15AGAMOUS-like 61