PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g006760.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 211aa    MW: 24061.5 Da    PI: 8.7272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g006760.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-0980127455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sopen03g006760.1  80 SHSLAERARREKISKKMKCLQDLVPGC----NKVIGKAGMLDEIINYVQSLQ 127
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-1574139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.50E-774131No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1676137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.95876126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-780127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-982132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MIDTQIDFGS EKRNWTSKKR KSEVYEEYEC KVKRLDGEAG EVKTEMIVKS EKGKNSKENL  60
EAKNTDFIHV RARRGQATDS HSLAERARRE KISKKMKCLQ DLVPGCNKVI GKAGMLDEII  120
NYVQSLQKQV EFLSIKLATS NVNTDNLFAK ELPNPTFLQQ QGNINIGVTQ RRENCLMSFP  180
EAFLDSSNVL ALQQLPNLET DLQCLFGVRF Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-174HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067911.11e-156transcription factor BEE 2-like
TrEMBLA0A3Q7FG061e-151A0A3Q7FG06_SOLLC; Uncharacterized protein
STRINGSolyc03g034000.2.11e-152(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36540.14e-45BR enhanced expression 2