PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g006890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 214aa    MW: 25489 Da    PI: 8.4163
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g006890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2055110257
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       rkR  +++eq++ Le+ F  ++++ +e++++LA++lgL+  qV vWFqNrRa++k+
  Sopen03g006890.1  55 RKRNLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKN 110
                       89****************************************************95 PP
2HD-ZIP_I/II110.41.3e-3556146292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       k+  ls+eqv+lLE+sF  ++kLe+erK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk++++ +  e+ rLe+ev +++++l 
  Sopen03g006890.1  56 KRNLLSEEQVNLLERSFGDQHKLETERKAKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKTQHEDIIIEKYRLETEVLKMKDQLC 146
                       66679**********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.55651111IPR001356Homeobox domain
SMARTSM003891.7E-1953115IPR001356Homeobox domain
SuperFamilySSF466892.13E-1854113IPR009057Homeodomain-like
CDDcd000861.13E-1555112No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2055118IPR009057Homeodomain-like
PfamPF000461.3E-1755110IPR001356Homeobox domain
PRINTSPR000315.5E-68291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000315.5E-691107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKGNKVDDQM ELISHFYPQI YSQLAQQQEE TVKPRRRRKK NKVEGRDNTS EVVMRKRNLL  60
SEEQVNLLER SFGDQHKLET ERKAKLASEL GLDPHQVAVW FQNRRARWKN KKLEEEYSKL  120
KTQHEDIIIE KYRLETEVLK MKDQLCEAKK KIERLLLERK IDISSNNSPT SSLIFSMEQS  180
HFSLGEFGME GQLMDNNMLF IADYQSTYMT LWDD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069477.11e-158homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU702e-55ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLM1BIA91e-137M1BIA9_SOLTU; Uncharacterized protein
STRINGSolyc03g034110.2.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-48homeobox protein 40
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]