PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g012740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 150aa    MW: 17116.6 Da    PI: 8.9224
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g012740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC38.82.1e-123082149
             NF-YC  1 qlksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllsk 49
                      q+k+fw+++   +e+ +++k n  lP +rikki k+ded++mi  e+ vll+k
  Sopen03g012740.1 30 QVKMFWTDKrreMENINNLKnNLLLPPTRIKKITKKDEDIRMIVVESSVLLTK 82
                      789***9887889*******45578*************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.3E-74982IPR009072Histone-fold
SuperFamilySSF471132.93E-549116IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MENNSEQSTV NAGQLVGVRQ LNIEKNKQEQ VKMFWTDKRR EMENINNLKN NLLLPPTRIK  60
KITKKDEDIR MIVVESSVLL TKKDDISDVI MKIDKLDFLI DDNDNSGDGS TPSVVPFYST  120
RGSNGQDGNI FIIKVFSSRL VVPLISKQQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-135HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006351565.17e-46PREDICTED: nuclear transcription factor Y subunit C-4-like
TrEMBLM1B8B72e-44M1B8B7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000394713e-45(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-09nuclear factor Y, subunit C4