PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g022490.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 245aa    MW: 27929.8 Da    PI: 7.7374
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g022490.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY47.63.3e-15161214359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+++W+K G  +    +  ++YY C    +Cp+k+++e+s++dp+ v++tY+g+Hnh+
  Sopen03g022490.1 161 DQWRWKKHGSNQ----TGRKNYYTCNEVdDCPAKRHIEQSSKDPTKVIVTYRGQHNHP 214
                       99*******765....55679*****998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.316154216IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-15156216IPR003657WRKY domain
SMARTSM007747.6E-8159215IPR003657WRKY domain
SuperFamilySSF1182903.53E-14160216IPR003657WRKY domain
PfamPF031067.7E-12161214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAENENDWDL GAIVRSCSKM NNSVRAIVDH GVHEDDNSAL VDNSVHGDGN SVNTSLFQEE  60
RNSVGDFREA FAVEKKRYFG LDEVISLANN LNTNSRIENR TETISNTPLV NVEHEEEKKK  120
KKKKARYSMQ SSTTESGNLF IYRGKIHERH EILAEELSKV DQWRWKKHGS NQTGRKNYYT  180
CNEVDDCPAK RHIEQSSKDP TKVIVTYRGQ HNHPPPQQNI PVVHRRPNAA APRENPSSYS  240
STSTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068853.10.0probable WRKY transcription factor 4
TrEMBLM1DX321e-104M1DX32_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000958051e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.12e-08WRKY DNA-binding protein 11