PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g022510.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 183aa    MW: 20873.1 Da    PI: 7.2735
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g022510.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.49.3e-16125179259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+++W+K G  +    +  ++YY C    +Cp+k+++e+s++dp+ v++tY+g+Hnh+
  Sopen03g022510.1 125 ADQWRWKKHGSNQ----TGRKNYYTCNEVeDCPAKRHIEQSSKDPNRVIVTYRGQHNHP 179
                       69********765....55679****9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-17118181IPR003657WRKY domain
PROSITE profilePS5081118.119119181IPR003657WRKY domain
SuperFamilySSF1182903.4E-15122181IPR003657WRKY domain
SMARTSM007742.4E-8124180IPR003657WRKY domain
PfamPF031063.5E-12126179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MADNENNSAL VNHGVHEGGG SVNKDTSLFQ EESKTVVDFR DAFAVEKKRY FGLDEVISLA  60
NNLNTTNSRT ENQSETIPNT PLMVLEHEEK KKGRYSMLSS STDQFAIRGK KLETHELSVE  120
ELLKADQWRW KKHGSNQTGR KNYYTCNEVE DCPAKRHIEQ SSKDPNRVIV TYRGQHNHPP  180
PKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165592.13e-92PREDICTED: probable WRKY transcription factor 33
TrEMBLM1D8B86e-91M1D8B8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000849051e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-13WRKY DNA-binding protein 35