PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g022550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 246aa    MW: 28145.8 Da    PI: 6.3914
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g022550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.41.4e-23164222259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+++WrKYG K   +s+f +sYYrC  a +Cp+++++++s++dp+ v++tY+g+Hnh+
  Sopen03g022550.1 164 ADQWRWRKYGMKRTGDSTFLKSYYRCNEAnDCPARRHIQKSSTDPNKVIVTYRGQHNHP 222
                       59*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-23158223IPR003657WRKY domain
PROSITE profilePS5081122.504158224IPR003657WRKY domain
SuperFamilySSF1182905.36E-20162223IPR003657WRKY domain
SMARTSM007744.4E-22163223IPR003657WRKY domain
PfamPF031069.2E-20165222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAENENENEN DWDLWAVVRS CGKRNNSVHD DMNVNNTSVF VDHSVHEDPT HGNSVNNTHQ  60
EETDGVGDFT DSFVTEHKHY FGLDEVISLS KNLNTNSRIE PHNQENQTET IPNTPLVVVE  120
HEEKKKKKVR FSMQISSTEA GKTFSYRGKS TERYEILAEK LSEADQWRWR KYGMKRTGDS  180
TFLKSYYRCN EANDCPARRH IQKSSTDPNK VIVTYRGQHN HPHIAMVHGS PNAAAPLEDP  240
SFPSST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068854.10.0WRKY transcription factor 22-like
TrEMBLM1DVX51e-153M1DVX5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000952711e-154(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.27e-17WRKY DNA-binding protein 69