PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g022580.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 258aa MW: 28148 Da PI: 8.4572

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g022580.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.4	1.7e-39	31	91	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+a++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+ Sopen03g022580.1 31 KEQAVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSN 91 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	24	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.003	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDTSPQWPQG IGIVKGVDEA KLDQRKPRPQ KEQAVNCPRC NSTNTKFCYY NNYSLTQPRY 60 FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS NSISISSSSS STTSSLSLSS SSKKLFTDLA 120 NPNDLNLTYN PIPSSSTTTA TNFSNFSDFM ALPLIHPSAN SASTFMTTSN LYPSSTTGIS 180 NLHDLKSSNG INFSLDGFEN GYGSLPSHQE AKLFFPMDDL KINVSTVGDE QFEENRGQAA 240 DQSNGFWNGM LGGGGTSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015069116.1	0.0	dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	7e-44	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A3Q7FMT8	1e-165	A0A3Q7FMT8_SOLLC; Uncharacterized protein
STRING	Solyc03g082840.2.1	1e-166	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-38	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]