PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g023090.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 395aa    MW: 44666.6 Da    PI: 4.7778
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g023090.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like568.5e-18145190551
           G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                       +Wt++LH++F++av+qL G+ +  Pk+il++m++++Lt+ +v+SHLQ
  Sopen03g023090.1 145 EWTEDLHAAFMRAVSQL-GEGRCYPKEILQAMNLPDLTRMQVASHLQ 190
                       7****************.9***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-12140190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-17144190IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-15145190IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MASPYHGMNG EISVMLIDND KEFVNEMTSL LNAHGYRAVC DEFNEFVAKK TLDDGAYLYL  60
KKPFNKEILI YLWQFVLAER KRKEKAREGS RKHKDQMKVN MINIVEENKE SEENIGKYTL  120
KRKKGTKSMQ NNAIDKVVRR KDCKEWTEDL HAAFMRAVSQ LGEGRCYPKE ILQAMNLPDL  180
TRMQVASHLQ GATSIMSGTY IQNAIINNYN LNVNNVTTYS SRAMMPNAYV GNVTINGMGA  240
TNANASSQQY VGEPIMNGPR NIDVAPYENY VEGSNSNKKE SRDVYLNFNN MDSHFQNLGP  300
SSANLPNELD REFDQVYSDD QDLGPPNANL PNAQGNELDQ VYSNIQNLET PSANLPNEQG  360
SQFGQVYSDE QNLGSLSANL PNEQDNEFDE VYSDH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984RKRKEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027771024.11e-145uncharacterized protein LOC107014247
TrEMBLA0A3Q7FN391e-124A0A3Q7FN39_SOLLC; Uncharacterized protein
STRINGSolyc03g083340.1.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-14response regulator 2