PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen03g023670.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 425aa MW: 49405.1 Da PI: 7.4556

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen03g023670.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.8	1e-53	128	255	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppGfrFhPtdeelv++yLkkk+++++++l +vikev++y++ePwdL++ ++ ee+ewyfFs++dkky++g+r+nrat++g+Wkatg+dk+ Sopen03g023670.1 128 PPGFRFHPTDEELVDYYLKKKITSTRIDL-DVIKEVNLYNIEPWDLQElcRIGReEEDEWYFFSHKDKKYPSGTRTNRATTAGFWKATGRDKA 219 9**************************.9***********954544442555******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s ++ l+g++ktLvfykgrap+g k+dW+mheyrl Sopen03g023670.1 220 VYS-NHDLIGMRKTLVFYKGRAPHGLKSDWIMHEYRL 255 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14223	1.1E-14	53	123	No hit	No description
SuperFamily	SSF101941	1.44E-60	123	276	IPR003441	NAC domain
PROSITE profile	PS51005	58.991	127	276	IPR003441	NAC domain
Pfam	PF02365	6.5E-28	128	255	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MSALNVKIDK FTGRNSFSLW QIKMRTLLKQ QGFWSPLSKD KNAVVTPEMA ILEEKAHSTI 60 MLCLADDVIT EVSDEETAAG LWLKLESLYM TKSLTKKLPL KQRLFGLRMA EGDIYIYICR 120 MNSFSHIPPG FRFHPTDEEL VDYYLKKKIT STRIDLDVIK EVNLYNIEPW DLQELCRIGR 180 EEEDEWYFFS HKDKKYPSGT RTNRATTAGF WKATGRDKAV YSNHDLIGMR KTLVFYKGRA 240 PHGLKSDWIM HEYRLHTDPN GAHQEEGWVV CRVFKKKMAS TRKESEKESP NNNDQVSFMP 300 NHIVSQHNYP CKKELIDNLN YQIPIPSHHH QQQSPKLVPS TSISVYNNLQ QSVSLLTREQ 360 VVDQVTDWRV LHKFVASQLS QEEENDYYSN TLHGVTDESN LNKQETVTEN NSTASSCFQI 420 DLWKL

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MSALNVKIDK FTGRNSFSLW QIKMRTLLKQ QGFWSPLSKD KNAVVTPEMA ILEEKAHSTI  60
MLCLADDVIT EVSDEETAAG LWLKLESLYM TKSLTKKLPL KQRLFGLRMA EGDIYIYICR  120
MNSFSHIPPG FRFHPTDEEL VDYYLKKKIT STRIDLDVIK EVNLYNIEPW DLQELCRIGR  180
EEEDEWYFFS HKDKKYPSGT RTNRATTAGF WKATGRDKAV YSNHDLIGMR KTLVFYKGRA  240
PHGLKSDWIM HEYRLHTDPN GAHQEEGWVV CRVFKKKMAS TRKESEKESP NNNDQVSFMP  300
NHIVSQHNYP CKKELIDNLN YQIPIPSHHH QQQSPKLVPS TSISVYNNLQ QSVSLLTREQ  360
VVDQVTDWRV LHKFVASQLS QEEENDYYSN TLHGVTDESN LNKQETVTEN NSTASSCFQI  420
DLWKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-49	126	277	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015068450.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-111	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A3Q7GAJ0	0.0	A0A3Q7GAJ0_SOLLC; Uncharacterized protein
STRING	Solyc03g083880.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62700.1	1e-106	Arabidopsis NAC domain containing protein 26

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]